Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7095 125 2e-23 seq6343 95.1 3e-14 seq6353 91.5 3e-13 >seq7095 Length=227 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||||| ||||| | || || ||| Sbjct 19 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCCTCCTCG 78 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || |||||||| || ||||| || Sbjct 79 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 138 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| || ||||| ||||| || |||| | |||||| Sbjct 139 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTG 198 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 199 CCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6343 Length=980 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||||| ||||| | || || ||| Sbjct 849 ACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCCTCCTCG 908 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || || ||||| || ||||| || Sbjct 909 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 968 Query 195052 ATTTT 195056 || || Sbjct 969 ATCTT 973 >seq6353 Length=6084 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||||| || || | || || ||| Sbjct 132 ACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCCTCCTCG 73 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || || ||||| || ||||| || Sbjct 72 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 13 Query 195052 ATTTT 195056 || || Sbjct 12 ATCTT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109335694848488