Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6512 93.3 3e-14 >seq6512 Length=2066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/147 (77%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 52053 ATGGGCGACAAGTT-TGC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAG--CCGTCCT 52108 || ||||||||||| ||| ||||| ||||| || ||||| || ||| | || | Sbjct 1121 ATTGGCGACAAGTTCTGCAGTCGT-CACGGT-CAGAAGGGTACCAACGGTATTCAGTTCC 1064 Query 52109 GACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 52168 | ||||||||||||||||||| || ||||| | ||||||||||||||||||||||| Sbjct 1063 G--CCAGGAGGACATGCCCTTCAACCGCGACGGTATTGTGCCCGACCTCATCATCAACCC 1006 Query 52169 CCACGCCTTTCCATCCAGGATGACCGT 52195 ||||| |||| ||| | ||||| || Sbjct 1005 TCACGCTATTCCCTCCCGTATGACGGT 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408566485002872