Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq6914 156 6e-33 >seq6914 Length=41223 Score = 156 bits (172), Expect = 6e-33 Identities = 244/342 (71%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||| ||||||| ||| ||| |||| ||| ||| | || || || ||| ||||||| Sbjct 23429 CCCTTGACGCAGATGACCTGCCTGAGCGTGCAGACAACCTCGACCAGATCCCGCTGGGCC 23488 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 ||||| || ||||| ||||||||||| ||| || ||||||| | || | | ||| Sbjct 23489 TCCATCACGGCGTCAATGTCCTTGTACGCCGCAGGCGTTTCGTCAAGGACATCCGTGTCT 23548 Query 136768 TTGCGGCACTCCACGCCCTCGGT---GGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGC 136823 || | ||| | | ||| |||| ||||| | ||||| || ||||||||| | || Sbjct 23549 TTCCTGCAGGCGATGCCGGCGGTGGCGGCCTCG---TGGTCGTCGAGGGTGAAGCGGCG- 23604 Query 136824 CTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGA 136880 ||| |||| | ||||| | | || ||| |||||||||||||||||||||||| | Sbjct 23605 CTTCGCCTCG--CCGCGGCTGTACCG-CCGCCCCGCGCCGTGCGAGCACGAGCAGTAGCT 23661 Query 136881 GTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 136940 ||| ||| || ||||| || |||||| ||| ||||||||||| || ||||||| Sbjct 23662 CTCCATCGAGCCTTTCCCGCGGACAATGTAGCTCTTCGCCCCCATCGACCCAGGGATGAC 23721 Query 136941 CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGT 136982 | ||| | | ||| | ||| | ||||||||||| || Sbjct 23722 CGCGAGCGTGCCCTCGTACGCAGCGGTGGCGCCCTTGCGCGT 23763 Score = 129 bits (142), Expect = 8e-25 Identities = 271/401 (68%), Gaps = 20/401 (5%) Strand=Plus/Plus Query 137020 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGAC 137079 |||||||||||||||||||||||||| | | ||| |||| ||| || || | Sbjct 23864 ACGTAGTTGTGGTGGCAGTTCACCGCCTGCGCGTCGACGGTGAAGGGCTGCGGGATGGTG 23923 Query 137080 GCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 137139 || | |||| | | ||| | | ||||| |||||| | ||||| | | | Sbjct 23924 CTGCGGAGGGCCCCGACGACGGCCTCGAGCATCAGACGGCGGTTCCACAGCGCGTACTTC 23983 Query 137140 TGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAA---CTCCG-GCTCGCCTTCGCAGAG 137195 || |||| |||| || | | |||||||| || ||||| || | ||| | || Sbjct 23984 TGCGCCCACTCGACAGCGGCGATGTAGTCGTCAAAGTGCTCCGTGCCCTCCTGC----AG 24039 Query 137196 CCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCAGCATCATCTCCTTGGC 137255 | || |||||| | | || | ||| || || | || ||| || |||||| Sbjct 24040 GTACGCGAGGTCCGCGCTCGGCAGGTTGTGCACG--AGCTTGCC-CATGTCCTTCTTGGC 24096 Query 137256 CTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCAT 137315 ||| ||| |||||| ||||||| ||||| || ||||||||||| ||||| ||||| Sbjct 24097 GAGCTCAATGTAGATGCTGCCGATGCGATTGCCCACACCGCGCGAGCCGGAGTGCAGCAT 24156 Query 137316 CACCCAGACGCGCTG---------GTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137366 |||||| || ||| | ||| ||||||||||||| |||||||||||||||||| Sbjct 24157 CACCCACACCCGCGGGTCAACGGCGTCGTCGTCGAGGCAGAGCTCGATGAAGTGGTTGCC 24216 Query 137367 GCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCT 137407 ||| |||||||| || ||| | ||| ||| | |||| Sbjct 24217 TGAGCCGAGGGTGCCGAGGTGGCCAACGTGGTTCGACTTCT 24257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690055454524800