Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq6914 127 4e-24 >seq6914 Length=41223 Score = 127 bits (140), Expect = 4e-24 Identities = 275/406 (68%), Gaps = 19/406 (5%) Strand=Plus/Plus Query 168645 ACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACGCCGGCACGAAC-TC 168703 |||||||||||||| ||||||||||| | | |||| |||| | | || || | Sbjct 23864 ACGTAGTTGTGGTGGCAGTTCACCGCCTGCGCGTCGACGGTGAAGGGCTGCGGGATGGTG 23923 Query 168704 C--CGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAGGCGCGCGAAGTCT 168761 | |||| ||| || ||| | | ||||| ||||||| ||||| | | Sbjct 23924 CTGCGGAGGGCCCCGACGACGGCCTCGAGCATCAGACGGCGGTTCCACAGCGCGTACTTC 23983 Query 168762 TGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCCCACTTCGAGCCAC 168821 |||||||| | || || ||||||||||||| || | || | |||| | | || || Sbjct 23984 TGCGCCCACTCGACAGCGGCGATGTAGTCGTCAAAGTGCTCCGTGCCCTCCTGCAGGTAC 24043 Query 168822 GCGAGGTTCTCGTCCTGCGGGC---GCACATGGCGCTTTGCCAGGGCGTTCTTCGCCTTC 168878 ||||||| | || | || || |||| | |||| ||| | | ||||| || | Sbjct 24044 GCGAGGTCCGCGCTCGGCAGGTTGTGCAC---GAGCTTGCCCATGTCCTTCTTGGCGAGC 24100 Query 168879 TCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGTGCAGCATCACC 168938 || ||| || | ||||||| ||||| || |||||||| || ||||||||||||||| Sbjct 24101 TCAATGTAGATGCTGCCGATGCGATTGCCCACACCGCGCGAGCCGGAGTGCAGCATCACC 24160 Query 168939 CACACGTTCGGGTC--CGTCGTCCCCTGATCGGTCTGGATGCAGATTTCGATGAAGTGGT 168996 ||||| |||||| || |||| ||| | || ||||| ||||||||||||| Sbjct 24161 CACACCCGCGGGTCAACGGCGTC-----GTCG---TCGAGGCAGAGCTCGATGAAGTGGT 24212 Query 168997 TGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCGACGTCTC 169042 |||| || || | ||||| ||| |||| ||||||| |||| Sbjct 24213 TGCCTGAGCCGAGGGTGCCGAGGTGGCCAACGTGGTTCGACTTCTC 24258 Score = 84.2 bits (92), Expect = 4e-11 Identities = 224/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||||||||| | |||||| |||| ||| ||| | ||| |||| || ||||||| Sbjct 23429 CCCTTGACGCAGATGACCTGCCTGAGCGTGCAGACAACCTCGACCAGATCCCGCTGGGCC 23488 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 |||| ||| || || |||||| ||| ||||| ||||| | || | ||| Sbjct 23489 TCCATCACGGCGTCAATGTCCTTGTACGCCGCAGGCGTTTCGTCAAGGACATCCGTGTCT 23548 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 || | ||| ||| ||| ||||| | |||| ||||| |||| || | | |||| Sbjct 23549 TTCCTGCAGGCGATGCCGGCGGTGGCGGCCTCGTGGTCGTCGAGGGTGAAGCGGCGCTTC 23608 Query 168453 GCCGCCGAACGCGACATGAC--GCGGCCGGCGCCGTGGCTGCACGAGCAGAAG-GCGTCA 168509 ||| | |||| | || || || |||||||| |||||||||| || | || Sbjct 23609 GCCTC--GCCGCGGCTGTACCGCCGCCCCGCGCCGTGCGAGCACGAGCAGTAGCTCTCCA 23666 Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCG 168569 || ||| || ||||| || ||| | ||| || |||||||| || || |||| || Sbjct 23667 TCG-AGCCTTTCCCGCGGACAATGTAGCTCTTCGCCCCCATCGACCCAGGGATGACCGCG 23725 Query 168570 AGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGT 168607 || | ||| | ||| | ||||||||||| || Sbjct 23726 AGCGTGCCCTCGTACGCAGCGGTGGCGCCCTTGCGCGT 23763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895651473170880