Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq6914 192 8e-44 >seq6914 Length=41223 Score = 192 bits (212), Expect = 8e-44 Identities = 493/733 (67%), Gaps = 37/733 (5%) Strand=Plus/Plus Query 139755 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAGGCCCGAG 139814 |||||||||||||||||||||||||| | | ||| |||||||| || || | | Sbjct 23864 ACGTAGTTGTGGTGGCAGTTCACCGCCTGCGCGTCGACGGTGAAGGGCTGCGGGATGGTG 23923 Query 139815 GCGCGCATGGCGTCCAGGACCCGGATC-ATCATCATCTCGCGGTTGATCCGCGCGAAGTC 139873 ||| | ||| | | ||| | || | ||||| |||||| | ||||| | | Sbjct 23924 CTGCGGAGGGCCCCGACGACG-GCCTCGAGCATCAGACGGCGGTTCCACAGCGCGTACTT 23982 Query 139874 CTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCCTTCCGACAGCCA 139933 ||| |||| |||| || | | |||||||| || | | | ||| ||| ||| | Sbjct 23983 CTGCGCCCACTCGACAGCGGCGATGTAGTCGTCAAAGTGCTCCGTGCCCTCCTGCAGGTA 24042 Query 139934 CGCGAGGTCCTTG-TCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCT 139992 |||||||||| | ||| || | || || || | | || || || |||||| Sbjct 24043 CGCGAGGTCCGCGCTCG-GCAGGTTGTGCACGAGCTTGCCCATG-TC--CTTCTTGGCGA 24098 Query 139993 TCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCA 140052 ||| ||| |||| | ||||||| ||||| || ||||||||||| ||||| ||||||| Sbjct 24099 GCTCAATGTAGATGCTGCCGATGCGATTGCCCACACCGCGCGAGCCGGAGTGCAGCATCA 24158 Query 140053 CCCAGACGCGCTG---------GTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGC 140103 |||| || ||| | ||| ||||||||||||| |||||||||||||||||| Sbjct 24159 CCCACACCCGCGGGTCAACGGCGTCGTCGTCGAGGCAGAGCTCGATGAAGTGGTTGCCTG 24218 Query 140104 CGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGA-GGGTCTTGTACTTGTCG 140162 ||| || ||||| || ||| | ||| ||| | |||| | | | || | | | | | Sbjct 24219 AGCCGAGGGTGCCGAGGTGGCCAACGTGGTTCGACTTCTCAATGTGCCTCGCGCGTCT-G 24277 Query 140163 CAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGTCGACC-CACTTGCGCATGATCGAGTT 140221 || |||| |||||| | | | ||| || || || || ||| ||| | | | Sbjct 24278 CACAGCTCCTCGAAGCCGCCCGCCA-GCTCG-CTCTTCCACACCGCCGC--CACCCGCTC 24333 Query 140222 CGGGATGCCGCTACGCCCGTTCCAGCCGCCCGACGGACCCGGCCCGCCGTGCGGGACGGC 140281 |||||| ||| ||||| | || || | |||| | |||| ||||||| | | | Sbjct 24334 CGGGATCGCGCCACGCCAGCCCCCAGCGTCGGACGCCGGCCGCCCCCCGTGCGTGCGGCC 24393 Query 140282 GT---GCTCGATCA--------GCGAG-CGCAGCTTGGCGAGGCTGTCGGGCAGGTCC-G 140328 || || || ||| ||||| || | | | || | ||| |||||| | Sbjct 24394 GTGTGGCACGCTCATCTCGATGGCGAGCCGGACGTCCTCCAGCGAGCTGGGGAGGTCCTG 24453 Query 140329 AGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCG 140388 || | |||||| ||||| | || | ||||||||||| ||||||||||| ||| || Sbjct 24454 CGGGC-GCAGCGACGTGCGGGCCGCGAGGATGCCGCAGCCAATGTCCACGCCAACGCTCG 24512 Query 140389 CCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGT 140448 |||||| | ||||| |||| ||||| || | ||| ||||| ||||||||||| || Sbjct 24513 ACGGGATCAGCGCGCCGGTGGTTGGGATGACGGTGCCGACGGTGGAGCCGATGCCGGAGT 24572 Query 140449 GGACGTCCGGCAT 140461 ||||||||||||| Sbjct 24573 GGACGTCCGGCAT 24585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715684165939200