Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq6914 123 4e-23 >seq6914 Length=41223 Score = 123 bits (136), Expect = 4e-23 Identities = 270/401 (67%), Gaps = 20/401 (5%) Strand=Plus/Plus Query 137579 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGAC 137638 |||||||||||||||||||||||||| | | ||| |||| ||| || || | Sbjct 23864 ACGTAGTTGTGGTGGCAGTTCACCGCCTGCGCGTCGACGGTGAAGGGCTGCGGGATGGTG 23923 Query 137639 GCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCC 137698 || | |||| | | ||| | | ||||| |||||| | ||||| | | | Sbjct 23924 CTGCGGAGGGCCCCGACGACGGCCTCGAGCATCAGACGGCGGTTCCACAGCGCGTACTTC 23983 Query 137699 TGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAA---CTCCG-GCTCGCCTTCGCAGAG 137754 || |||| |||| || | | |||||||| || ||||| || | ||| | || Sbjct 23984 TGCGCCCACTCGACAGCGGCGATGTAGTCGTCAAAGTGCTCCGTGCCCTCCTGC----AG 24039 Query 137755 CCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTTGGC 137814 | || |||||| | | || | ||| || || || || || || |||||| Sbjct 24040 GTACGCGAGGTCCGCGCTCGGCAGGTTGTGCACGAGCTTGCCCATG-TC--CTTCTTGGC 24096 Query 137815 CTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCAT 137874 ||| ||| |||||| ||||||| ||||| || ||||||||||| ||||| ||||| Sbjct 24097 GAGCTCAATGTAGATGCTGCCGATGCGATTGCCCACACCGCGCGAGCCGGAGTGCAGCAT 24156 Query 137875 CACCCAGACGCGCTG---------ATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925 |||||| || ||| | || ||||||||||||| |||||||||||||||||| Sbjct 24157 CACCCACACCCGCGGGTCAACGGCGTCGTCGTCGAGGCAGAGCTCGATGAAGTGGTTGCC 24216 Query 137926 GCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCT 137966 ||| |||||||| || ||| | ||| ||| | |||| Sbjct 24217 TGAGCCGAGGGTGCCGAGGTGGCCAACGTGGTTCGACTTCT 24257 Score = 98.7 bits (108), Expect = 1e-15 Identities = 227/342 (66%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 137207 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 137266 ||||| ||||||| ||| ||| |||| ||| ||| | || || || ||| ||||||| Sbjct 23429 CCCTTGACGCAGATGACCTGCCTGAGCGTGCAGACAACCTCGACCAGATCCCGCTGGGCC 23488 Query 137267 TCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGCCGGCGTCC 137326 ||||| || ||||| ||||||| | || | | ||| Sbjct 23489 TCCATCACGGCGTCAATGTCCTTGTACGCCGCAGGCGTTTCGTCAAGGACATCCGTGTCT 23548 Query 137327 TTGCGGCACTCCACGCCCTCGGTGGC---CTTGATCTGGTCCTCCAGAGTGAAG-GTCGC 137382 || | ||| | | ||| ||||||| || | ||||| || || |||||| | ||| Sbjct 23549 TTCCTGCAGGCGATGCCGGCGGTGGCGGCCTCG---TGGTCGTCGAGGGTGAAGCGGCGC 23605 Query 137383 CTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGA 137439 || |||| | ||||| | | || ||| |||||||||||||||||||||||| | Sbjct 23606 -TTCGCCTCG--CCGCGGCTGTACCG-CCGCCCCGCGCCGTGCGAGCACGAGCAGTAGCT 23661 Query 137440 GTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 137499 ||| ||| || ||||| || |||||| ||| ||||||||||| || ||||||| Sbjct 23662 CTCCATCGAGCCTTTCCCGCGGACAATGTAGCTCTTCGCCCCCATCGACCCAGGGATGAC 23721 Query 137500 CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGT 137541 | ||| | | ||| | ||| | ||||||||||| || Sbjct 23722 CGCGAGCGTGCCCTCGTACGCAGCGGTGGCGCCCTTGCGCGT 23763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709630542718720