Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq6914 127 3e-24 >seq6914 Length=41223 Score = 127 bits (140), Expect = 3e-24 Identities = 273/402 (68%), Gaps = 22/402 (5%) Strand=Plus/Plus Query 136343 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGAC 136402 |||||||||||||||||||||||||| | | ||| |||| ||| || || | Sbjct 23864 ACGTAGTTGTGGTGGCAGTTCACCGCCTGCGCGTCGACGGTGAAGGGCTGCGGGATGGT- 23922 Query 136403 GCT-CGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTC 136461 ||| || | |||| | | ||| | | ||||| |||||| | ||||| | | Sbjct 23923 GCTGCGGAGGGCCCCGACGACGGCCTCGAGCATCAGACGGCGGTTCCACAGCGCGTACTT 23982 Query 136462 CTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAA---CTCCG-GCTCGCCTTCGCAGA 136517 ||| |||| |||| || | | |||||||| || ||||| || | ||| | | Sbjct 23983 CTGCGCCCACTCGACAGCGGCGATGTAGTCGTCAAAGTGCTCCGTGCCCTCCTGC----A 24038 Query 136518 GCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTTGG 136577 | | || |||||| | | || | || || || || || || || ||||| Sbjct 24039 GGTACGCGAGGTCCGCGCTCGGCAGGTTGTGCACGAGCTTGCCCATG-TC--CTTCTTGG 24095 Query 136578 CCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCA 136637 | ||| ||| |||||| ||||||| ||||| || ||||||||||| ||||| |||| Sbjct 24096 CGAGCTCAATGTAGATGCTGCCGATGCGATTGCCCACACCGCGCGAGCCGGAGTGCAGCA 24155 Query 136638 TCACCCAGACGCGCTG---------GTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGC 136688 ||||||| || ||| | ||| ||||||||||||| ||||||||||||||||| Sbjct 24156 TCACCCACACCCGCGGGTCAACGGCGTCGTCGTCGAGGCAGAGCTCGATGAAGTGGTTGC 24215 Query 136689 CGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCT 136730 | ||| |||||||| || ||| | ||| ||| | |||| Sbjct 24216 CTGAGCCGAGGGTGCCGAGGTGGCCAACGTGGTTCGACTTCT 24257 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 136124 TGGTCCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGC 136179 ||||| || ||||||||| | ||| || |||| | ||||| | | || ||| ||||| Sbjct 23582 TGGTCGTCGAGGGTGAAGCGGCGC-TTCGCCTCG--CCGCGGCTGTACCG-CCGCCCCGC 23637 Query 136180 GCCGTGCGAGCACGAGCAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTT 136239 ||||||||||||||||||| | ||| ||| || ||||| || |||||| ||| Sbjct 23638 GCCGTGCGAGCACGAGCAGTAGCTCTCCATCGAGCCTTTCCCGCGGACAATGTAGCTCTT 23697 Query 136240 GGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTT 136299 ||||||||||| || ||||||| | ||| | | ||| | ||| | |||||||| Sbjct 23698 CGCCCCCATCGACCCAGGGATGACCGCGAGCGTGCCCTCGTACGCAGCGGTGGCGCCCTT 23757 Query 136300 GCGGGT 136305 ||| || Sbjct 23758 GCGCGT 23763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701273215101440