Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6703 277 3e-69 seq1748 176 8e-39 >seq6703 Length=6023 Score = 277 bits (306), Expect = 3e-69 Identities = 1072/1665 (64%), Gaps = 47/1665 (3%) Strand=Plus/Plus Query 212586 GTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCT 212645 ||||| || ||||||||||| ||||| ||||| || ||||| ||| | |||||| | Sbjct 3499 GTGCGGAGGTAGTACATGCCCGTCTTGAGGCCGGAGCGCCAGCAGTGGAAGTGCATGGAG 3558 Query 212646 GTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGAC 212705 |||| | | | | | || | |||| || ||| |||| |||||| Sbjct 3559 GTGATCTGCCCCGACGTC-------GGGCT--CTCGAGGA--AGA----GGTTGAGGGAC 3603 Query 212706 TGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAG 212765 || |||||| ||| | ||| | | || |||||||| |||| | | ||| | | Sbjct 3604 TGGGACTGGTCAATGTACTTGGCGCGCGCGGCCGCCATGTCAATGAGCTTGCGCTGCGGG 3663 Query 212766 AGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGC 212825 | |||||||||||| | ||| | |||||||| || |||| |||||| | | |||| Sbjct 3664 ATCTCCCACACGGTGCGGTAGAGCTGCTTGAGGTCGTCCGGGATGCCGGGCACCTGCTGC 3723 Query 212826 ACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTC 212885 || || || || | | | | || ||||| ||||||||| ||||| | | Sbjct 3724 ACGGAGCCGTTGAGGGAGATGATCTCGTTGCGCACCGTCTCGTTCCACAGGCCACGCTTG 3783 Query 212886 TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTC 212945 ||| | | || ||| ||| || | |||| || || ||| || | | Sbjct 3784 ATGAGGTCCATCACGAGGAACTTGTTCACGACGGGGAACTCGCCGCTGAGGACGCGGCGG 3843 Query 212946 TGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTG 213005 ||| | ||| || ||| ||||||||| || ||||||||| || |||||||| | || Sbjct 3844 ACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGACGTC 3903 Query 213006 CTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG 213065 ||| || ||||| || |||| ||| || ||| | || || | || | | | Sbjct 3904 GAGGCGGTCGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCCCGTCGCGACAACACGC 3963 Query 213066 CGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATG 213125 | || | ||||||||||| | | | | | ||| || | ||| | ||||| | Sbjct 3964 TTCTTGAGGGCCGCCCAGTCCCACCGGTCCGTC--GTCGGCGGC-TTCTC---CCACAGG 4017 Query 213126 TCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGC 213185 || ||||| | |||| | | |||||||||| || | | ||| | || | | Sbjct 4018 TCGAACTGGAGCTTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTACGCCCCCTCC 4077 Query 213186 TCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCC 213245 || || || || ||||| || | || ||||||||||| || || || |||||| Sbjct 4078 ACCGCCGCGAGGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTCGAAGATCTCC 4137 Query 213246 CTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||| |||| || ||||| || || ||| |||| | | | ||| | || Sbjct 4138 TCGTTCAGCTGCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGAATGAAGGCGTCC 4197 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTC- 213364 || || ||||| || |||| ||||| ||| | ||| | | ||| | || | || Sbjct 4198 GCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTT-GCTGCGGCGGGCTGT 4256 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 ||| | ||||| |||||| ||| |||| ||||||||||||| ||| | ||||| Sbjct 4257 CTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTGATGTCCTTGGT 4316 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAG 213484 || || || || ||| | ||||||| | || | ||||||| ||||| Sbjct 4317 CACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGACAAACTTGGGCAG 4376 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 |||||| ||| |||||||| |||||| ||||| | |||||||| || ||||| Sbjct 4377 CGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTACTCGATAATCTC 4436 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| ||| |||||| || | ||||| ||||| ||| ||||| | || Sbjct 4437 CGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGAC-TTGCGGTTGC 4495 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | ||||||||||||||| | || || ||||| | ||||||| | || || | Sbjct 4496 AGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGA 4555 Query 213664 TCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGT 213722 ||| || | |||| |||| |||| | | | | ||| || |||||||| | Sbjct 4556 ACCACAGCT-CCTGCGCCTGGACCGTCTGGACGCCGAGGCCGCGC---GCCTCGTAGTCC 4611 Query 213723 TCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGA 213782 ||||| || || || || | ||| || | | || || || |||| ||| Sbjct 4612 TCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGG 4671 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTC-TGACTCTCTGCATGAACAGGTCCGGGACCCA 213841 ||| || |||| | || || ||| |||| | ||||||||||||| |||| ||| Sbjct 4672 TCCATCAGCGTCCACTTGCCCTC-GCTCATGACGCGGCGCATGAACAGGTCGGGGATCCA 4730 Query 213842 CAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT---TTTGCGCAG 213898 || || ||| ||||| | | | | || ||| |||| ||| ||| |||| Sbjct 4731 GAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAG 4790 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || ||| | |||||||| |||||||||||||| | ||| | ||| ||||||||| Sbjct 4791 ---CAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTT 4847 Query 213959 CCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 | ||| ||||||||| ||||| | ||| | || | | ||||| | || Sbjct 4848 GCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGG 4907 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTT 214075 || || |||||||| |||||||| || || || || ||||| || | | ||| Sbjct 4908 CACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTT 4967 Query 214076 GCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGT 214135 | | | | || ||||| || ||| |||| |||||||||||| | | | || Sbjct 4968 GTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGT 5027 Query 214136 CTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG---AG 214192 || ||||||| | |||||||| || | | || | || | ||| |||| | Sbjct 5028 GTCGTAGATGCCGTCGATGCTGTCCTCCTTCA---TCGCGACGAGGAAGCACGAGCTCAT 5084 Query 214193 CTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 ||| ||| ||| | ||| | |||||| ||||| || |||| || Sbjct 5085 CTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTG 5129 >seq1748 Length=1330 Score = 176 bits (194), Expect = 8e-39 Identities = 568/860 (66%), Gaps = 25/860 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 76 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 135 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| ||||| | | ||| || | | ||||| | | ||||| Sbjct 136 CATGAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCCCAGCGACACAAGCAG 195 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGG-GTGATGTTCATGCCTATGAGGG 48017 | | ||||| || |||| ||||| | | ||| || | || |||||| || || || Sbjct 196 GCGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGA-GTTCATCCCGATCAGCC 254 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| |||| || | || ||||| | ||| || ||| || | | |||| Sbjct 255 GCACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATCT 314 Query 48078 GCTTAACGCGGGA-CTCTG-AG--GGT--TTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 | ||||| | | | | || ||| ||| || | | || ||| || |||| || Sbjct 315 CCAGCACGCGCGCGCGCGGCAGCCGGTGCTTGATGTG--GCTG-TTG---TACAGCAGGC 368 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | ||||||||| |||||| || ||||| || ||||||| ||||| ||| |||| Sbjct 369 ACGCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGAC 428 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| || || | || || |||||||| | || ||| || ||||||||||||| Sbjct 429 CGGGCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGA 488 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT-GAG 48310 |||||||||| || |||||| || | || | ||| | | ||||| | | || | Sbjct 489 TGCCCTCCACCGCGGCGAACCCGATCAGGCGCTC-CTG---GAAGCTCGCCTCGCTCCCG 544 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| |||||||| || ||||||| || |||||| || ||||||| || || | Sbjct 545 ATCCACCGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGCGTGC 604 Query 48371 AAGAGCTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | || | | || || ||| || ||||| | || || |||||| | |||| Sbjct 605 AGCAGGTGC-AGC-TTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACGGAGTACG 662 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || | ||||||||||||||| || | ||||| || Sbjct 663 TCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCA 722 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| ||| || | ||| | | | ||| ||||| || || || || | | Sbjct 723 CCTTCACGTCGCTCATGAACCGCAGCGCCAGGTTCTCCACCACGATGCCGTCGCTCCCCG 782 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 | |||||||| || || || || | ||| || |||||| || | | || |||| Sbjct 783 CGAAGAAGGCCAGCACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTCAGCTTCACCCAGT 842 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTT 48667 | | ||| ||||||||||| | || |||| ||||||| | | | | ||| | Sbjct 843 CAGCCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGC-TCC 901 Query 48668 TTGTACATGCCCCATATGTC 48687 |||||| ||| ||| ||||| Sbjct 902 TTGTACTTGCGCCAGATGTC 921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931413284341760