Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6703 190 4e-43 seq1748 132 9e-26 >seq6703 Length=6023 Score = 190 bits (210), Expect = 4e-43 Identities = 680/1049 (65%), Gaps = 33/1049 (3%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || |||| |||||| ||||| |||||| || ||| || || |||||||| || | Sbjct 4108 GCCGCGTAGTAGATCGTCTCGAAGATCTCCTCGTTCAGCTGCTGCGCCTCGGGCGAGTCG 4167 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 || |||| || || | ||| |||| || || ||||| || |||| |||| ||| Sbjct 4168 AACGGCAGGCGGAGGAGAATGAAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGG 4227 Query 221543 CTGTGTCTCCTGTTGGAAGCGGCCG-CT-TCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||| | | ||||| ||||| | || ||| | || || || ||||| ||| || | Sbjct 4228 CGGTGGCGCGTGTTGCT-GCGGCGGGCTGTCTCG-ACAGGGTAGTAGTTGCGGTCAATGA 4285 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTC-AGCTTCTGGTGATTGAAC 221659 ||||||||||| |||||| | || |||| |||| ||| |||||| | |||| Sbjct 4286 CCTTGTTGAGGTTGTACGTGATGTCCTTGGTCACC-CGGTAGAGCAGCTGGTGGTCGAAC 4344 Query 221660 ACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719 || || ||| |||| ||||| | || || | | ||| ||| Sbjct 4345 ACGCCCTTCTCGCGGTCG------------ACAAACTTGGGCAGCGCGATGGAGGCGAGG 4392 Query 221720 TTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTG 221779 || ||||||||| ||| ||| || |||| || ||||| || || |||||| | Sbjct 4393 TTGCACACGGCCGTCTCCTCCGGCGACGTGTACTCGATAATCTCCGTGCACAGGTTGGAG 4452 Query 221780 CACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGC 221839 ||||||||||| || | || || || || |||||||| ||| ||||||||||||||| Sbjct 4453 CACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGC 4512 Query 221840 ATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GC 221898 || || || |||| ||||| | ||| | | | || || | ||| || || ||| || Sbjct 4513 ATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGAACCACAGCTC-CTGCGC 4571 Query 221899 GCTCACCGTCCTCTTGA--CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCA 221956 |||| ||| || | | || || | | | || ||| || || |||| Sbjct 4572 CTGGACCG---TCTGGACGCCGAGGCCGCGCGCCTCGTAGTCCTCGTACAG-GC-GGTCA 4626 Query 221957 AACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAG 222016 |||| || ||||| || ||| ||||| || || | ||| |||||| |||| Sbjct 4627 AACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGGTCCATCAGCGTCCA- 4685 Query 222017 TGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 |||| | | |||| | ||||||| ||||| |||||||| || | | ||| Sbjct 4686 --CTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCAGAGGCCGTAGAAG 4743 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 || || | | ||||| |||||| ||| |||| | | || || || | || Sbjct 4744 AGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAGCAGGAAGCCGAAG 4803 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 ||||| |||||||||||||| || || ||||| | ||||| ||||| ||| ||| Sbjct 4804 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 4863 Query 222194 TGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 |||||||| | | || | | || || |||| || || |||||||| Sbjct 4864 TGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGGAG 4923 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCG 222313 ||||||||||| ||||| ||| | || | | ||| | || |||| Sbjct 4924 GTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACGTGCACGCCG 4983 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 || || || ||| || |||||||||||| |||||| ||||| |||||| || Sbjct 4984 ATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAGATGCCGTCG 5043 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || ||||||||| | | || || || || |||||| | |||| || | | Sbjct 5044 ATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTGCCG 5103 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGT 222462 ||||| || ||||| || |||||||||| Sbjct 5104 GCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 >seq1748 Length=1330 Score = 132 bits (146), Expect = 9e-26 Identities = 522/809 (65%), Gaps = 21/809 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| ||||||| | |||| | ||| | | | | ||||| Sbjct 873 GAGGAGATCGACCTGGGCAACGACATGGCTGACTGGGTGAAGCTGAA--CGACGGCGAGC 816 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| |||| ||||| || | || || || ||| |||| Sbjct 815 GGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCGGGGAGCGACGGCATCGTGGTGGAGA 756 Query 25640 ATCTGTGCGA-GAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | ||| ||| | | |||| || || ||| || |||||| | | ||| |||||| Sbjct 755 ACCTG-GCGCTGCGGTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGG 698 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| || ||| ||| ||||| Sbjct 697 GTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCCGTGCTGCTGGACACGTA 638 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | | ||| | || ||| || || || ||| Sbjct 637 CATCACGGACAGCGAGGAGA-AGCTGCACCTGCTGCACGCGATCCAGACGATCCCGTGCA 579 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || || |||||| |||||| || ||||||| ||| || || | || | Sbjct 578 TCCAGGAGAAGGCCGAGTGGGCGCTGCGGTGGATCGGGAGCGAG---GCGAGCTTCCAGG 522 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||| ||| | | || || || |||||||||||||| ||| || ||||| |||| | Sbjct 521 AGCGCCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGC 462 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || || |||||||| ||| || ||||||||||||| Sbjct 461 -TGTTCTGGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATC 403 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || ||||| |||||||| |||| ||||| | Sbjct 402 TCGCGCGACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGTACAACAGCCACATCAAG 343 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||| | | | | | ||| || || ||||||| || ||| |||||| | Sbjct 342 CACCGGCTGCCGCGCGCGCGCGTGCTGGAG-ATCATCACGTCCGCGGTGACCATCGAGCA 284 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC-AACAGACTCATGA 26173 ||||| | || |||||| ||| || ||| Sbjct 283 CGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAG-CTGATGG 225 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || |||||||||| |||||| |||| |||| |||| | |||||| | | | Sbjct 224 CGCAGTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTC-GCTGGGCGAGGAGAAGTAC 166 Query 26233 TACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAAC 26292 |||| || | |||||||||||||| ||||| | || ||| || | || ||||| ||| Sbjct 165 TACAACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAAC 106 Query 26293 TTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| || |||| ||||||||| || || Sbjct 105 TTCTTCGAGAAGAAGGTCGGCGAGTACCA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928725629212160