Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq9699 264 1e-65 seq1185 150 2e-31 seq2363 114 2e-20 seq8336 87.8 2e-12 >seq9699 Length=2580 Score = 264 bits (292), Expect = 1e-65 Identities = 1021/1593 (64%), Gaps = 22/1593 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| |||| ||||| | || || || ||||| || || || || ||||| || || || Sbjct 93 GCTGTTGGCATCGACCTCGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAACGAGCGC 152 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||||||| |||| ||||| || ||||| || || || |||||||||||||| || Sbjct 153 GTGGAGATTATCGCGAACGACCAGGGTAACCGCACGACGCCGTCGTACGTTGCCTTCACG 212 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || | || ||||| || || || ||| || |||||||| ||| Sbjct 213 GACAGCGAGCGCCTGATCGGCGATGCTGCCAAGAACCAGGTCGCGATGAACCCCCACAAC 272 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||||||||| || ||||| |||||| | || ||||| | Sbjct 273 ACCGTCTTCGACGCGAAGCGCCTGATTGGCCGCAAGCTGAGCGACTCCGTTGTCCAGGCG 332 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGC--TGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| || | | ||| || ||||| || | Sbjct 333 GACATGAAGCACTGGCCCT-TCAAGGTG-ACGAGCAAGGGCGACGAGAAGCCGATCGTGC 390 Query 195597 ATGTTGAATTTC-ACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655 | | ||| | | | || ||| |||| || | ||||| || || || |||||| Sbjct 391 A-GGTGACGTACAAGGGCGAGGAGAAGACCTTCTCCCCCGAGGAGATCAGCTCGATGGTG 449 Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 || | |||||||||||||| || || | | | | || || ||||| | || || Sbjct 450 CTGCTGAAGATGAAGGAGACCGCTGAGGCGTACCTCGGCAAGCAGGTGAAGAAGGCCGTG 509 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 ||||| || || || ||||||| || || || || |||||||| ||||| || | | Sbjct 510 GTGACGGTGCCCGCCTACTTCAACGACTCCCAGCGTCAGGCGACGAAGGATGCCGGCACG 569 Query 195776 ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || || || || | || | || ||||| || || || || ||||| || || || Sbjct 570 ATCGCTGGCCTCGAGGTGCTCCGCATCATCAACGAGCCGACGGCCGCTGCCATCGCGTAC 629 Query 195836 GGTCTGGACAAGAACAAGGA---CGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGT 195892 ||||||||||||| | |||| | | || || || | ||||| || ||||| || Sbjct 630 GGTCTGGACAAGAGCGAGGATGGCCAGGAGCGCAACGTGCTCATCTTCGACCTCGGCGGC 689 Query 195893 GGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACT 195952 |||||||| ||||| | || || | || || || || || ||||| || ||||| || Sbjct 690 GGTACGTTCGATGTGACGCTGCTGACGATCGACGGCGGCATCTTCGAGGTGAAGGCCACG 749 Query 195953 GCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC--CGTCATTTGT 196010 || || || || || || || ||||| || || || || ||| || | || || Sbjct 750 GCCGGCGACACGCACCTCGGCGGTGAGGACTTTGACAACCGCCTTGTCAACTTC--TTCA 807 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTC 196067 || |||||| || ||||| ||| || || | || | | | || || | Sbjct 808 GCGACGAGTTCAAGCGCAAGAACAAGGGCAAGGACCTCTCCTCGAGCCACCGCGCCCTGC 867 Query 196068 GTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAA 196127 | || || | || || || || || ||||| || || || || || || | || | | Sbjct 868 GCCGCCTGCGCACGGCCTGCGAGCGCGCCAAGCGCACGCTGTCGTCCGCGACCCAGGCCA 927 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 || ||||| ||| | |||| ||| | |||||| | | || || ||||| || | Sbjct 928 CCGTCGAGATCGATGCCCTGTTCGACAACGTCGACTTCCAGTCCACGATCACCCGCGCCC 987 Query 196188 GTTTTGAAGAGTTAAACTCT---GATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAG 196244 | || || ||| | || | || | || | | || | || || || | | Sbjct 988 GCTTCGAGGAGCT---CTGTGGCGACCTCTTCCGCAGCACCGTGCAGCCGGTGGAGCGCG 1044 Query 196245 TACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGAT 196304 | || ||||| |||||||| ||| || | || | || || || || || | Sbjct 1045 TGCTGTCCGACGCGAAGATGGACAAGCGCTCCGTGCACGACGTGGTGCTCGTTGGCGGCT 1104 Query 196305 CAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAA 196364 | ||||| || |||||| | || | | || || ||| || || | | Sbjct 1105 CCACCCGCATCCCGAAGGTGCAGTCCCTCATCTCGGACTACTTTGGCGGCAAGGAGCTGA 1164 Query 196365 ACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTC 196424 |||| | |||||||| ||||| || || || || || ||||| || ||||| |||| Sbjct 1165 ACAAGAGCATCAACCCCGATGAGGCCGTCGCGTACGGCGCGGCTGTGCAGGCGTTCATTC 1224 Query 196425 TCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 | | || | | | || | | | || ||||| || ||||| | || | Sbjct 1225 TGACCGGCGGCAAGAGCAAGCAGACGGAGGGCCTGCTGCTGCTGGATGTGACGCCGCTGA 1284 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 | || || |||| || || ||||| || |||||| | || | | ||||| || | Sbjct 1285 CGCTCGGCATTGAGACGGCCGGTGGCGTGATGACTGCGCTGATCAAGCGCAACACCACGA 1344 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA 196604 | ||||| |||||| || |||| || ||||| | || || || || || || || | Sbjct 1345 TCCCGACCAAGAAGAGCCAGATCTTCTCCACGTACGCGGACAACCAGCCCGGCGTGCACA 1404 Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCG 196664 | || || | || || || ||| || | ||||| ||| || || || || |||| Sbjct 1405 TCCAGGTCTTCGAGGGCGAGCGCGCCATGACCAAGGACTGCCACCTTCTCGGCACCTTCG 1464 Query 196665 ATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATA 196724 | || | || || || | || ||| | || || || |||||| | || ||||| Sbjct 1465 ACCTGTCCGGCATCCCGCCGGCGCCCCGTGGCGTGCCGCAGATTGAGGTGACGTTCGACC 1524 Query 196725 TAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAA 196784 | ||||| || || || || ||||| | || ||||| |||| | ||||| | Sbjct 1525 TGGACGCCAACGGTATCCTGAACGTGTCCGCGGAGGAGAAGGGCACCGGCAAGCGCAACC 1584 Query 196785 AGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTC 196844 |||| || ||||| |||||||| || || ||| || ||||| || ||||| Sbjct 1585 AGATCACCATCACCAACGACAAGGGCCGCCTCAGCAAGTCCGAGATTGACCGCATGGTGA 1644 Query 196845 AAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | || || | |||||| || || ||| ||| Sbjct 1645 ACGACGCCGCCAAGTACGAGGCCGAGGACAAGG 1677 >seq1185 Length=2153 Score = 150 bits (166), Expect = 2e-31 Identities = 452/695 (65%), Gaps = 12/695 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || |||||| | || || || ||||| || || || || | | ||||| | Sbjct 215 GCCATCGGCATCGATCTGGGCACGACCTACTCGTGCGTGGGCGTGTTCAAGAATGACCAG 274 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || ||||| ||||| | Sbjct 275 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCTCCTACGTGGCCTTCAAC 334 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || ||||| || || ||||| || || ||| || |||||||| ||| Sbjct 335 GACTCGGAGCGCCTCGTCGGCGACGCCGCCAAGAACCAGGTGGCGATGAACCCCCACAAC 394 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| ||||| ||||| | ||||||||||||| || | | | || | Sbjct 395 ACCATCTTCGACGCCAAGCGCATGATTGGTCGCAAGTACGACGACCACGATCTGCAGTCC 454 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || | ||||| | | | Sbjct 455 GACATGAAGCACTGGCCCT-TCAAG--GTCACCGTCAAGGACGGCAAGCCGGTTGTCGAG 511 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | || || ||| || || | ||||| || || | ||||| | Sbjct 512 GTGGAGTACCAGGGCTCGAACAAGACCTTCACCCCCGAGGAGATCAGCGCGATGGTTCTC 571 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 |||||||||||||| ||||| | | ||| || | || |||| | || || ||| Sbjct 572 GGCAAGATGAAGGAGACCGCGGAGGCGTACATTGGCGAGACGGTGACGAAGGCCGTCGTG 631 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || || |||||||| |||||||| | | || Sbjct 632 ACGGTGCCCGCCTACTTCAACGACTCGCAGCGCCAGGCGACGAAGGACGCCGGCACGATC 691 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || | || | || ||||| || || || || || || || || || || Sbjct 692 GCCGGCCTCGAGGTGCTCCGCATCATCAACGAGCCGACGGCCGCCGCCATCGCCTACGGC 751 Query 195839 CTGGACAAGAACAAGGAC------GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGT 195892 ||||| ||||||| | || || || || | || ||||||||||| || Sbjct 752 ATGGAC---CGCAAGGACGCCTCGGGCGAGAACAACGTGCTCATTTTTGATCTCGGCGGC 808 Query 195893 GGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACT 195952 |||||||| ||||| | || || | || || || | ||||| || ||||| || Sbjct 809 GGTACGTTCGATGTGACGCTGCTGACGATCGAGTCCGGCGTCTTCGAGGTGAAGGCGACG 868 Query 195953 GCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || || ||||| || || || Sbjct 869 GCCGGCGACACGCACCTCGGCGGTGAGGACTTTGA 903 >seq2363 Length=4049 Score = 114 bits (126), Expect = 2e-20 Identities = 228/331 (69%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||||||| || || |||| |||| || | || || |||| || ||||| Sbjct 1468 AAGATGAAGGAGACCGCTGAGCAGTTTCTTGGG-AACAAGGTCAAGAATGCTGTCGTGAC 1526 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || ||||||| ||| | || || |||||||| |||||||| | | ||||| Sbjct 1527 GTGCCCCGCGTACTTCAACGATGCGCAGCGCCAGGCGACGAAGGACGCCGGCACGATTGC 1586 Query 195781 GGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 || || || ||| ||| | |||||||||| || || ||||| || ||||| | |||| Sbjct 1587 CGGCCTCAA-TGTCCTTCGTGTTATCAATGAGCCCACCGCGGCCGCTATTGCGTTTGGTG 1645 Query 195840 TGGACAAGAACAAGG--ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 | ||||||| ||||| ||| ||| || || | || || ||||| || || Sbjct 1646 TCGACAAGACCAAGGATACGCTGAT-----TGCCGTG---TACGACCTTGGTGGCGGCAC 1697 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||| ||| |||| | ||| | |||| || | ||||| || ||||| || || Sbjct 1698 GTTCGATATCTCGATCCTCGAGATTGCGTCCGGCGTGTTCGAGGTGAAGGCGACCAACGG 1757 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || || || || ||||| || |||||| Sbjct 1758 CGACACGCACCTCGGCGGTGAGGACTTCGAT 1788 >seq8336 Length=25161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/327 (66%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGA-CTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 ||||||||||||| | || || ||| ||| || | | ||||| | || || | || Sbjct 22933 AAGATGAAGGAGATCAGC-GAGACTTACATTGGCCAGAAGGTGAAGAACGCCGTCATCAC 22875 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || || ||||||| || | || || ||| |||| |||||||| | | ||||| Sbjct 22874 CGTCCCGGCGTACTTCAACGACGCTCAGCGCCAGTCGACCAAGGACGCCGGCACGATTGC 22815 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| | | || ||||| || || || || || || || || || || || Sbjct 22814 CGGCCTCAACGTGGTCCGCATCATCAACGAGCCCACGGCCGCCGCTATCGCGTACGGCCT 22755 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||||| | || || || | || |||| |||||||| ||||| ||||| Sbjct 22754 ------CAACAAGGAGGGCGAGAAGAACATTCTGGTCTTCGATCTCGGCGGTGGCACGTT 22701 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||||| || || |||| ||||| | || | || || || ||| || ||||| Sbjct 22700 CGATGTGTCCCTGCTCACGATTGACGAGGGCTTCTTTGAGGTGGTGGCGACGAACGGTGA 22641 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || || || || Sbjct 22640 CACCCACCTTGGCGGCGAGGACTTTGA 22614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657777996254080