Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6703 226 3e-53 seq1748 181 1e-39 seq5778 91.5 2e-12 >seq6703 Length=6023 Score = 226 bits (250), Expect = 3e-53 Identities = 242/318 (76%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| || |||||||| || |||| || | || || ||||| |||||||||||||| Sbjct 4860 GCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTT 4919 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| |||||||||||| || | |||| |||||| ||||| | ||||| || | Sbjct 4920 GGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACGTGCAC 4979 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||||||| || | |||| ||| | ||||||| |||||||||||||||||||| Sbjct 4980 GCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAGATGCC 5039 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||| ||||||| | ||||| |||||||| | ||||| | | || Sbjct 5040 GTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTGGGGGT 5099 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGC--CGCGACATGGCGTCG 1630359 |||||||||||||||||| ||||| || ||| ||| ||| ||||||||||||||| Sbjct 5100 GCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACA--TGCCGCGCGACATGGCGTCG 5157 Query 1630360 TAGGTGGCGAGCACGCGC 1630377 ||||| ||| |||| ||| Sbjct 5158 TAGGTCGCGCGCACCCGC 5175 Score = 203 bits (224), Expect = 4e-46 Identities = 345/494 (70%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 1626985 TCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGTC 1627044 || ||||| |||| ||| ||||| |||||||||| ||||| || ||||||||||| ||| Sbjct 3463 TCAACGGTGAACTTGATCGCGTCCGCGGCGGGCCGCGTGCGGAGGTAGTACATGCCCGTC 3522 Query 1627045 TTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTCG 1627104 ||||||||| |||||| || | |||||| || ||||| || | | ||||| | Sbjct 3523 TTGAGGCCGGAGCGCCAGCAGTGGAAGTGCATGGAGGTGATCTGCCCCGACGTCGGGCTC 3582 Query 1627105 GCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATA--GGGCGCGCGATCGGCCGCCA 1627162 || | | |||||||| |||||| |||||| | || |||||||| ||||||||| Sbjct 3583 TCGAGGAAGAGGTTGAGGGACTGGGACTGGTCAATGTACTTGGCGCGCG--CGGCCGCCA 3640 Query 1627163 TGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTCGG 1627222 |||| ||| || | || | |||||||||||| | ||| |||||||||| Sbjct 3641 TGTCAATGAGCTTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTGCTTGAGGTCGT 3700 Query 1627223 GCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTGTCGC 1627282 ||| | || | | || |||||| ||||||| | || || | || || Sbjct 3701 CCGGGATGCCG--GGCACC----TGCTGCACGGAGCCGTTGAGGGAGATGATCTCGTTGC 3754 Query 1627283 G-AAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACC 1627341 | | ||| | |||||||||| ||| || ||| | | || ||| ||| || Sbjct 3755 GCACCGTCTCG-TTCCACAGGCCACGCTTGATGAGGTCCATCACGAGGAACTTGTTCACG 3813 Query 1627342 ACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCAC 1627401 |||| || ||||| ||| |||||||| ||||||||| ||||| | |||| | Sbjct 3814 ACGGGGAACTCGCCGCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAG 3873 Query 1627402 GCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGC 1627461 |||| ||||||| || ||||||||||||| ||| || ||||| |||||| || ||| Sbjct 3874 CACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAGCAGCAGC 3933 Query 1627462 GAGTTGCGCAGGCC 1627475 |||||||||| ||| Sbjct 3934 GAGTTGCGCATGCC 3947 Score = 181 bits (200), Expect = 1e-39 Identities = 342/506 (68%), Gaps = 8/506 (2%) Strand=Plus/Plus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158 |||||||||||||||| || | | || |||||||| ||| ||| ||||||| Sbjct 4361 CGACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACG 4420 Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGT 1628218 ||| || ||||| ||||||||||||| || | | ||||| | ||||| ||||| Sbjct 4421 TGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGT 4480 Query 1628219 TGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCG 1628278 | | | ||||| ||||||||||| ||||||| | ||| |||| ||||||||||| | Sbjct 4481 TCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGG 4540 Query 1628279 CCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCAC-GACAGTCCGCGCGCGGCCCTNN 1628337 | ||| |||||| |||| | || |||| | || | | | ||| || |||| Sbjct 4541 ACTCGAGGATGGCGAACCACAGCTCCTGCGCCTGGACCGTCTGGACGC-CGAGGCCGCGC 4599 Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGC 1628397 ||||| || |||||||| ||| |||||||| Sbjct 4600 GCCTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGG 4659 Query 1628398 ---GCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAG 1628454 | || || || | | |||| ||| | ||| || ||| |||||||||| || Sbjct 4660 CAGGTCTTGG--GGTCCATC-AGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAAC 4716 Query 1628455 AGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 1628514 ||||| |||| || |||| |||||||||||||| || | ||||||||||| | Sbjct 4717 AGGTCGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG 4776 Query 1628515 TTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 1628574 || ||||| || || ||| |||||||||||||||||||| ||||| ||| Sbjct 4777 TTGCGCTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCG 4836 Query 1628575 AAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||||||||||| |||||||| Sbjct 4837 AAGGCGCCCTTGCGCTTACCGCCGCC 4862 >seq1748 Length=1330 Score = 181 bits (200), Expect = 1e-39 Identities = 228/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||| | ||| | Sbjct 666 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCT 725 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || |||||||||| ||||||||||| |||||||||||||||| | |||| Sbjct 726 TCACGTCGCTCATGAACCGCAGCGCCAGGTTCTCCACCACGATGCCGTCGCTCCCCGCGA 785 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||| ||||||||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 786 AGAAGGCCAGCACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTCAGCTTCACCCAGTCAG 845 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||||| || ||||| | |||||| |||||||| || ||| || |||| Sbjct 846 CCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGT 905 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || | ||| | | ||||| |||| ||||| || || || |||| ||||||||| Sbjct 906 ACTTGCGCCAGATGTCGTGGTACTGGATCGGGAACAGCACGAACCGGTAGGGGTTGTCCT 965 Query 869931 GCAACAGGGGTTC 869943 ||| ||| || || Sbjct 966 GCAGCAGCGGCTC 978 Score = 150 bits (166), Expect = 2e-30 Identities = 231/324 (71%), Gaps = 9/324 (3%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||||||||| || | |||||| ||||| |||||||||| |||||||| Sbjct 70 CGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGAT 129 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || |||||| | ||||||||| | || ||||||| ||| || || |||||| | Sbjct 130 CATCTCCATGAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCCCAGCGACAC 189 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||||||||| || |||||||| |||||||| ||| || | |||||| ||||| Sbjct 190 AAGCAGGCGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGAGTTCATCCCGAT 249 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC--G 868927 ||| ||||||||||| |||| | ||||| | |||||| || || ||| | Sbjct 250 CAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACCGC--GGACGTG 307 Query 868928 ATGATCT---GCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAG 868983 ||||||| || | || || |||| | || | |||| | | | |||| ||||| Sbjct 308 ATGATCTCCAGCACGCGCGCGCGCGGCAGCCGG-TGCTTGATGTGGCTGTTGTACAGCAG 366 Query 868984 GCAGGCAAAGTCGCAGTGCAACCC 869007 ||| |||||||| ||||| ||| Sbjct 367 GCACGCAAAGTCCGTGTGCAGCCC 390 Score = 114 bits (126), Expect = 2e-19 Identities = 197/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | || |||||||| | |||||||||| Sbjct 389 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCGGGCATCACGCCGCGCTTC 448 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || ||||| ||||||||||| || ||||| || Sbjct 449 TTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGCCCTCCACCGCGGCGAAC 508 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||| || ||||| ||| ||| |||| | ||||||| || |||||| Sbjct 509 CCGATCAGGCGCTCCTGGAAG--CTCG----CCTCGCTCCCGATCCACCGCAGCGCCCAC 562 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| | | | |||| | ||| | ||| ||| | | ||||| ||| || Sbjct 563 TCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAGGTGCAGCTTCTCC 622 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | |||| ||| || ||||| | ||| | || || |||||| Sbjct 623 TCGCTGTCCGTGATGTACGTGTCCAGCAGCACGGAGTACGTCTCC 667 >seq5778 Length=9870 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 509102 CACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGC 509161 |||| || | ||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 6676 CACACAATGGCCGGCCGCGAGGGCCTCGTCGACACGGCGGTGAAGACGGCCGAGACGGGG 6617 Query 509162 TACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCT 509199 ||||| | ||||| | ||| ||||||||| ||| Sbjct 6616 TACATTTACCGCCGCCTGAGTAAGGCGATGGAGAACCT 6579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106296888093688