Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq5506 84.2 2e-11 >seq5506 Length=4707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 43881 CCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGTCCTCGCAGAACTCC 43940 |||||||||||| ||| ||||| ||||||||||||| || | | |||||| | Sbjct 1264 CCGTCGAGGGCGCTCACCATGACAATCTTCCCCGCGTCGGCGGCGGTGTTGCAGAAGGGC 1205 Query 43941 ACTAGGTCGATGAAGAACTGGCCCTCGTCGATGCCCACCACGTC 43984 || |||||| |||||||||||||||||||| | | || ||||| Sbjct 1204 ACGAGGTCGGGGAAGAACTGGCCCTCGTCGACGGCGACAACGTC 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475980523862720