Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6703 114 1e-20 >seq6703 Length=6023 Score = 114 bits (126), Expect = 1e-20 Identities = 229/337 (68%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| |||| |||||| || |||||| || ||||| ||| || Sbjct 4804 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 4863 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 |||||||||| || | | ||||| | || |||||||| || | || ||| ||| | Sbjct 4864 TGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGGAG 4923 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGC--CGCGTACGCTGTTCACGTTCAATC 151883 |||||||| || || | |||| |||| |||| | | ||| |||| || | Sbjct 4924 GTGCCGTTGGTGCCGGCGATGTAGCTGC--CGGCAGCGCGGATGTTGTGAACGTGCACGC 4981 Query 151884 CAATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGC 151943 | || ||||| || || |||||||||||| || || | |||| ||||||||| Sbjct 4982 CGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAGATGCCGT 5041 Query 151944 GAATGCTATCGCTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGC 152003 ||||| || | ||| | | || || || || ||||||||||| | | |||| Sbjct 5042 CGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTGC 5101 Query 152004 CGGCAGCGAACATGGTTGGGCTTGCGTGCGTGTACAT 152040 |||| ||| | || || | ||||| |||||||| Sbjct 5102 CGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACAT 5138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488481319804800