Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq6914 95.1 5e-15 >seq6914 Length=41223 Score = 95.1 bits (104), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 49415 CGCTG--ATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGAC 49472 ||||| ||||| |||| ||| |||||| || || | ||||||||||||||||| || Sbjct 24592 CGCTGTCATGCCGGACGTCCACTCCGGCATCGGCTCCACCGTCGGCACCGTCATCCCAAC 24533 Query 49473 TATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGC 49532 | || ||| |||||||| | || ||||||||||| |||||||| || |||| || Sbjct 24532 CACCGGCGCGCTGATCCCGTCGAGCGTTGGCGTGGACATTGGCTGCGGCATCCTCGCGGC 24473 Query 49533 CCGCAC 49538 |||||| Sbjct 24472 CCGCAC 24467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193736383562400