Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6703 489 2e-133 seq1748 286 3e-72 seq7095 134 1e-26 seq6353 96.9 3e-15 seq6343 96.9 3e-15 >seq6703 Length=6023 Score = 489 bits (542), Expect = 2e-133 Identities = 1188/1771 (67%), Gaps = 56/1771 (3%) Strand=Plus/Plus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 || ||||| | ||||| || ||||||||||||||||||||||| |||||| || | Sbjct 3487 GCGGCGGGCCGCGTGCGGAGGTAGTACATGCCCGTCTTGAGGCCGGAGCGCCAGCAGTGG 3546 Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058 ||||| || | || || |||||||| | | || || || | |||||| Sbjct 3547 AAGTGCATGGAGGTGATCTGCCCCGACGTCGGGCTCTCGAGGAAGAGGTTGAGGGACTGG 3606 Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTC--- 148115 |||||||||| || | | || | || ||||| |||||||| ||| || | Sbjct 3607 GACTGGTCAATGTACTTGGCGCGCGCGGCCGCCATGTCAATGAG---CTTGCGCTGCGGG 3663 Query 148116 ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGC 148175 |||||||| | || ||| ||| |||||| | || || |||||| | ||||| Sbjct 3664 ATCTCCCACACGGTGCGGTAGAGCTGCTTGAGGTCGTCCGGGATGCCGGGCACCTGCTGC 3723 Query 148176 ACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTC-CGTGT-ATAGGTTGAGCT 148233 || |||||| | | | | |||| ||||||| |||| ||| | ||| ||| Sbjct 3724 ACGGAGCCGTTGAGGGAGATGATCTCGTTGCGCAC--CGTCTCGTTCCACAGGCCACGCT 3781 Query 148234 CGATCAGGTC-ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 ||| ||||| ||| | || ||| ||||| || | ||||||||| ||| ||||| Sbjct 3782 TGATGAGGTCCATC-ACGAGGAACTTGTTCACGACGGGGAACTCGCCGCTGAGGACGCGG 3840 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | ||| || || || || || ||||||||||||| | |||||||| Sbjct 3841 CGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAC 3900 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 |||| || || ||||| ||| | ||||||||||||||||| || || | | Sbjct 3901 GTCGAGGCGGTCGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCC-CG--TCGCGACA 3957 Query 148413 TTGCGCTTC---AGAGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATG 148466 |||||| || |||||||||||||| | || || ||| | | | ||||| | Sbjct 3958 ACACGCTTCTTGAGGGCCGCCCAGTCCCACCGGTCCGTCGTCGGCGGCTTCTCCCACAGG 4017 Query 148467 TCGTACTGCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTG 148525 ||| |||| || |||| | | | ||||||||||| | ||| ||||| || | Sbjct 4018 TCGAACTGGAGCTTGCC-CTCCGACGCGGGGCTGCCGGGGAACGTCTCGTACGCCCCCTC 4076 Query 148526 CGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 | ||||||| || || | || ||||| ||| ||||||| ||||||||| || | Sbjct 4077 CACCGCCGCGAGGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTCGAAGATCTC 4136 Query 148586 CCTGTTGAGCAGCGCCGCCGACTCGCTT-TCGTACGGCATACGCAGCCGCACAAACGCGT 148644 | ||| ||| || |||| | || ||| |||||| || || | | || |||| Sbjct 4137 CTCGTTCAGCTGCTGCGCCT-CGGGCGAGTCGAACGGCAGGCGGAGGAGAATGAAGGCGT 4195 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | || || ||||| ||||| | ||| | ||| ||||| ||||| | |||| || Sbjct 4196 CCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTGCGGCGGGCTG 4255 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 |||||| || |||| ||||||||| |||| ||||| || ||| | | |||| | Sbjct 4256 TCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTGATGTCCTTGG 4315 Query 148765 TAATTCTGCGCAGCAATT------CAAAATCGTACTTGTCA---TCTACGATGCATCGGT 148815 | | | | |||| | | || || ||| || || || | | | || Sbjct 4316 TCACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGACAAA-CTTGGG- 4373 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||||| ||||| || ||||||||||||||||| ||||| | ||||||| | | Sbjct 4374 -CAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTACTCGATAA 4432 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| ||| ||||| || | |||||| || || ||||| || Sbjct 4433 TCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGT 4492 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG- 148994 |||| ||||||||||| |||||| |||| |||| || || | ||| | || | ||| Sbjct 4493 TGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGG 4552 Query 148995 --AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATA 149052 |||| ||| |||||||| | || ||| || | | || | |||||| Sbjct 4553 CGAACCA---CAGCTCCTGCGCCTGGACCGTCTGGACGCCGAGGCCGCGCGCCTCGTAGT 4609 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 ||||| || || ||| ||||||||||| |||| ||| |||||||| | | | Sbjct 4610 CCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGG 4669 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTAC-ACGCGCTTCATAAACAGATCGGGCACC 149171 || ||| |||| |||| ||| || || | ||||| ||| ||||| ||||| | | Sbjct 4670 GGTCCATCAGCGTCCACTTGCCCTC-GCTCATGACGCGGCGCATGAACAGGTCGGGGATC 4728 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG---GCGC 149228 ||||| |||| | |||||||||||| ||| || ||| ||||||| | || Sbjct 4729 CAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGC 4788 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 || || | || ||| ||||| |||||||||||||||| |||||| |||| |||||| Sbjct 4789 AGC---AGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCC 4845 Query 149289 TTGCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 |||||||| ||||||||| || |||| ||| | |||| || |||| || | ||| Sbjct 4846 TTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATC 4905 Query 149346 GGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACT 149405 || | | ||| ||| |||||||| || | ||| |||||| || || | Sbjct 4906 GGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATG 4965 Query 149406 TTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 ||||| |||| |||||||||||||| || ||| ||| ||||| || |||| Sbjct 4966 TTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGC 5025 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || ||||||||| ||||||||||| |||||| | | || |||||||||| ||| Sbjct 5026 GTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATC 5085 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 ||||| | |||||||| ||| | || || |||||||||| | || | | Sbjct 5086 TGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT-GTACATGCCGCG 5144 Query 149586 C-TCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644 | ||| ||||| | | || |||| || | |||||| | || || ||||| | || Sbjct 5145 CGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATGCCGACAGC 5204 Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 || ||||| | ||| |||||||| |||||| Sbjct 5205 CACACGCATGATCATGTGCTGCGGACGCTCC 5235 >seq1748 Length=1330 Score = 286 bits (316), Expect = 3e-72 Identities = 617/898 (69%), Gaps = 50/898 (6%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| ||||| || ||||| || ||||||| || ||| || | | Sbjct 76 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 135 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||||||||| ||| ||| |||| ||| || ||||| | || ||||| Sbjct 136 CATGAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCCCAGCGACACAAGCAG 195 Query 120471 TCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 |||||||| |||||||||||||||| ||| ||| ||||| |||||| || | || | Sbjct 196 GCGGTCCGCCACAAACTCAATGTACTGCGC-CATCAGCTGCGAGTTCATCCCGATCAGCC 254 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 |||||||| || || || || ||||| | ||| ||| |||||| | ||| || Sbjct 255 GCACCGGCAGCG-CGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATC 313 Query 120589 GCGAGCATAGTGTG-GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647 | |||| | | | || |||| | ||| | |||| | | ||| ||||||||| Sbjct 314 TCCAGCA-CGCGCGCGCGCGGCAGCCGGTGCTTGATGTGGCTGTTGTACAGCAGGCACGC 372 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 ||||||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||| Sbjct 373 AAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCGGG 432 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCC-GAAAAGAACACGC 120766 ||| | ||| | |||| | |||| | || ||| | | ||| || ||||| | || Sbjct 433 CATCACGCCGCGCTTCTTCAGCCAGAACAGCGC-GCAGAACGACCCAGAGAAGAAGATGC 491 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 ||||||| ||| || ||| || |||||| || |||| || ||| |||||| Sbjct 492 CCTCCACCGCGGCGAACCCGATCAGGCGCTCCTGGAAGCTCGC---CTCGCTCCCGATCC 548 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 || || |||||||||||||| | | | |||||| ||| || || ||||| ||| Sbjct 549 ACCGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGCGT---GCA 605 Query 120887 GCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATG--------AGCAGATTGTA 120938 ||| || ||| ||||| ||| || | ||||| | | |||| ||| Sbjct 606 GCAGGTGCAGCT---TCTCCT-CGCTGTCCG-TGATGTACGTGTCCAGCAGCACGGAGTA 660 Query 120939 CATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCTC 120995 | | |||| ||| | | ||| |||| || ||||| ||| || ||||||| Sbjct 661 CGTCTCCGAGTGGATGTTCTCCATCATCA---GCTGGAACCCGTAGAACGCGCGCGCCTC 717 Query 120996 CAGCTCGGGCACCGCCCGCTGCATGTACTCGA---TAAGGTTAATATTCACGATACTGTC 121052 | || | ||| |||| |||| || | ||||| |||||| | ||| Sbjct 718 CGGCACCTTCAC--GTCGCT-CATGAACCGCAGCGCCAGGTTCTCCACCACGATGCCGTC 774 Query 121053 GGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 | | |||||||| ||||||||||||||||| ||||| |||||| |||| | ||||| Sbjct 775 GCTCCCCGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTCAGCTT 834 Query 121113 GTGCGCAAAATC-GTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCACATGCA-- 121169 | | | || | ||| ||| ||| |||||||| |||||||| | |||| ||||| Sbjct 835 ---CACCCAGTCAGCCAT-GTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGC 890 Query 121170 -ATCGAGCGCCTGTTTATAAGCCGTCCACAGGTCGTTGTGTTGAATCGGGAACAGTAC 121226 || || ||| | || || ||| | ||||| || || ||||||||||| || Sbjct 891 TCTCCTGCTCCT-TGTACTTGC--GCCAGATGTCGTGGTACTGGATCGGGAACAGCAC 945 >seq7095 Length=227 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| ||| ||| |||||||||||||||||| Sbjct 31 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCCTCCTCGAGCTGCTTGCCC 90 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 91 GCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 150 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| | | |||||| || | || || || ||||||||||| || Sbjct 151 ACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTC 210 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 211 TTCACGAAGATCTGCAT 227 >seq6353 Length=6084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| ||||||||||||||||| Sbjct 120 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCCTCCTCGAGCTGCTTGCCG 61 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | ||||| |||||||| || || |||||||| |||||||| |||||| Sbjct 60 GCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 8 >seq6343 Length=980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| ||||||||||||||||| Sbjct 861 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCCTCCTCGAGCTGCTTGCCG 920 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | ||||| |||||||| || || |||||||| |||||||| |||||| Sbjct 921 GCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483358777111360