Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6703 230 2e-55 seq1748 120 3e-22 >seq6703 Length=6023 Score = 230 bits (254), Expect = 2e-55 Identities = 588/874 (67%), Gaps = 37/874 (4%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCT-CTTCGGCGTCGCTGTACTGCACGATTTC 147518 ||||| || || || ||||| |||||||||| || ||||| || |||||| | || || Sbjct 4378 GCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACG-TGTACTCGATAATCTC 4436 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | |||||||||| ||| || ||| || | || | ||| || || || ||||| Sbjct 4437 CGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGTTGCA 4496 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| |||||||| |||| |||| ||||||| || | || | ||| || Sbjct 4497 GGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGAA 4556 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCT----GCCGATAGCGGCCCTCGTTTTCGTACC 147691 || ||| |||||||| | ||| || ||||| || || | | ||||| Sbjct 4557 CC---ACAGCTCCTGCGCCTGGACCGTCTGGACGCCGA-GGCCGCGCGC---CTCGTAGT 4609 Query 147692 GCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACA-CTGATGC 147750 |||||||| || |||||||| ||||||||| |||| |||||||| || | || Sbjct 4610 CCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGG 4669 Query 147751 GGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACC 147810 || | |||||||| |||| || | || | ||||| ||||| ||||| || || | | Sbjct 4670 GGTC-CATCAGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATC 4728 Query 147811 CACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870 || || |||| | || |||||||| ||||| ||| ||||||| || | Sbjct 4729 CAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGC 4788 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | || |||||||||||||||| || |||| ||| ||||| | || || || Sbjct 4789 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTG 4848 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| |||||||| || || | ||| | |||| || |||| |||| ||| || Sbjct 4849 CGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGC 4908 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | |||||| | | |||||||||||| ||| | ||||||| || || | | | Sbjct 4909 ACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTG 4968 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTT--TGAT-ATGGCAGCGCAATCGCCCAAT 148104 || |||| ||||| |||||||| || ||| |||| ||| ||||| || | Sbjct 4969 TGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATG---GCGCACTCCTTGAGC 5025 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACAT 148163 || ||||||||||||||||||||| | || | ||| | | | || ||||| | ||| Sbjct 5026 GTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACG-AGGAAGCACGAGCTCAT 5084 Query 148164 TTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTG 148223 ||||| | | || || || ||| || || || | ||||| || ||| | Sbjct 5085 CTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACA---TGCC 5141 Query 148224 ACTCATCAT-GCG--ATACGTCTC-AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCA 148279 | | ||| ||| || ||| | | | || | |||||| | ||||||||||| | Sbjct 5142 GCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGC-ATGTCGCCACCGTGAATGCCGA 5200 Query 148280 GCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || || ||||||| ||||||||| || || || Sbjct 5201 CAGCCACACGCATGATCATGTGCTGCGGACGCTC 5234 >seq1748 Length=1330 Score = 120 bits (132), Expect = 3e-22 Identities = 339/503 (67%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCAT 46834 |||||| ||||||| || |||||||| ||||||| || | ||| | | ||||| | Sbjct 570 AAGGCCGAGTGGGCGCTGCGGTGGATCGGGAGCGAG---GCGA-GCTTCCAGGAGCGCCT 515 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttC-GGGCAGTTTTGCCGCCATTTTTT 46893 | | | ||||| || || ||| | || || || ||| ||| ||| || | || | Sbjct 514 GATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGC-GCGCTGTTCT 456 Query 46894 ACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | || | ||| | ||||| || ||||||||||| |||||| | |||||||||| Sbjct 455 GGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCG 396 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAAT 47013 |||| || || ||||||||||||||||| || ||||| | | | | || | Sbjct 395 ACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGTACAACAGCCACATCAAGCACCGGC 336 Query 47014 TAAACTCGGACACG-ATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTT 47072 | | || | || | ||| || | | | ||||||| |||||| | ||||| Sbjct 335 T-GCCGCGCGCGCGCGTGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGTTC 277 Query 47073 TTTACTGCG--GCGCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-A 47128 | ||||| |||||||| || || | || | || |||||| | ||| ||| ||| | Sbjct 276 AT--CTGCGACGCGCTGCCGGTGCGGC-TGATCGGGATGAACTCGCAGCTGATG-GCGCA 221 Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAA 47188 || ||||||||||||||||| || ||| | ||| ||| || | ||| || | || Sbjct 220 GTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTACAA 161 Query 47189 TGCTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTT 47246 |||| || ||||| || || ||| | | || ||||| ||||||| || || || Sbjct 160 --CTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 103 Query 47247 TTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| ||||| ||||| Sbjct 102 TTCGAGAAGAAGGTCGGCGAGTA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476550050783040