Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1748 284 2e-70 seq6703 192 8e-43 >seq1748 Length=1330 Score = 284 bits (314), Expect = 2e-70 Identities = 424/595 (71%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||||| || ||||| |||| || || |||||||| |||| ||||| Sbjct 978 GAGCCGCTGCTGCAGGACAACCCCTACCGGTTCGTGCTGTTCCCGATCCAGTACCACGAC 919 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| |||||| ||||||| Sbjct 918 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCT 860 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| || |||||||| ||||| ||||| |||||| || ||||||||||| Sbjct 859 GGGCAACGACATGGCTGACTGGGTGAAGCTGAACGACGGCGAGCGGCACTTCATCAAGCA 800 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||||| || ||| | ||||| |||||||||| ||||||||||| || | Sbjct 799 CGTGCTGGCCTTCTT-CGCGGGGAGCGACGGCATCGTGGTGGAGAACCTGGCGCTGCGGT 741 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||| ||||| || ||| |||||||||||| | || | Sbjct 740 TCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 681 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | ||| | ||||| ||| ||| |||| | | Sbjct 680 AGAACATCCACTCGGAGACGTACTCCGTGCTGCTGGACACGTACATCACGGACAGCGAGG 621 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| ||||| | | ||| ||| | ||| | |||| | | | |||||||| | Sbjct 620 AGAAGCTGCACCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGGAGAAGGCCGAGT 561 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 ||||| || ||||||| |||| | ||| ||| ||||| || |||| || Sbjct 560 GGGCGCTGCGGTGGATC----GGGAGCGAGGCGA-GCTTCCAGGAGCGCCTGATCGGGTT 506 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 ||||| || ||||||||||| ||||| || |||||||| | || ||||| ||||| Sbjct 505 CGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAA 446 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| | ||||||||||| | || |||||||| | ||| |||||||| Sbjct 445 GCGCGGCGTGATGCCCGGTCTGACG-TTCAGCAACGAGCTCATCTCGCGCGACGA 392 Score = 143 bits (158), Expect = 4e-28 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 1456544 ATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACC 1456603 |||||| | ||||| || |||| ||||||||||| ||| ||||| |||||| | | Sbjct 291 ATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAAC-TCGCA 233 Query 1456604 GCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCG 1456663 ||| ||| |||||||||| | ||||| || ||||||||||| | | |||| ||| | | Sbjct 232 GCTGATGGCGCAGTACATTG-AGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGC-GAG 175 Query 1456664 GAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGC 1456723 |||||| ||||| || | ||||||||| | |||||| |||||||||| ||||| Sbjct 174 GAGAAGTACTACAACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 115 Query 1456724 AAGACCAACTTTTTCGAG-CGCCGCGTGGCGAGTACGCCAAGGCCGGCGT 1456772 ||||| ||||| |||||| | | ||||||||| ||||| ||||| Sbjct 114 AAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGCGT 65 >seq6703 Length=6023 Score = 192 bits (212), Expect = 8e-43 Identities = 351/499 (70%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 262918 GGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTG 262977 ||| ||||||||||| |||| |||||| ||||| || ||| ||||||||||||| || Sbjct 3947 GGCATGCGCAACTCGCTGCTGCTGGCGCCGATGCCGACCGCCTCGACGTCGCAGATTCTC 3888 Query 262978 GGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCG 263037 ||||||| |||| |||||| | |||| ||||||||| |||||||| ||| Sbjct 3887 GGCAACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTCCTCAGC 3828 Query 263038 GGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG 263097 ||||| || |||| || ||| ||| || | | | | | ||| ||||||||| Sbjct 3827 GGCGAGTTCCCCGTCGTGAACAAGTTCCTCGTGATGGACCTCATCAAGCGTGGCCTGTGG 3768 Query 263098 ACGCCCGACTTT-CGCGACCGGCTCAT-TGCGGCACAGGGCTCGGTGCAG--GGCTTTGA 263153 | | ||| | ||| || | |||| | | || | ||||| |||||| || || Sbjct 3767 AA-CGAGACGGTGCGCAACGAGATCATCTCCCTCA-ACGGCTCCGTGCAGCAGG---TGC 3713 Query 263154 CGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAA 263213 | || | | | ||| ||| |||||| |||| | |||||||||||| | || | Sbjct 3712 C--CG-GCA--TCCCGGACGACCTCAAGCAGCTCTACCGCACCGTGTGGGAGATCCCGCA 3658 Query 263214 CCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCC--TATGTCGACCAGAGCCAGTCG 263271 || | |||||| |||||||||| |||||||| || | |||||| |||||| Sbjct 3657 GCGCAAGCTCATTGACATGGCGGCCG--CGCGCGCCAAGTACATTGACCAGTCCCAGTCC 3600 Query 263272 CTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTA-TGC 263330 |||||||| | ||||| ||||||| | | | ||||| || |||||| | | ||| Sbjct 3599 CTCAACCTCTTCCTCGAGAGCCCGACGTCGGGGCAGATCACCTCCATGCACTTCCACTGC 3540 Query 263331 GTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGC 263390 ||||| |||||||||||| ||||||||||| || ||||| |||||||| || |||| Sbjct 3539 -TGGCGCTCCGGCCTCAAGACGGGCATGTACTACCTCCGCACGCGGCCCGCCGCGGACGC 3481 Query 263391 CATTCAATTCACCGTCGAT 263409 || | |||||||| ||| Sbjct 3480 GATCAAGTTCACCGTTGAT 3462 Score = 190 bits (210), Expect = 3e-42 Identities = 280/394 (71%), Gaps = 17/394 (4%) Strand=Plus/Minus Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852 || ||||| || ||| | ||| |||||||||| || | ||| | | || || |||| Sbjct 5237 GTGGAGCGTCCGCAGCACATGATCATGCGTGTGGCTGTCGGCATTCACGG---TGGCGAC 5181 Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT-TGTT 259911 |||| ||| |||| ||| |||||||| |||||||||| || | ||| Sbjct 5180 -------ATGC-----AGCGGGTGCGCGCGACCTACGACGCCATGTCGC-GCGGCATGTA 5134 Query 259912 CACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTG 259971 ||| || ||||| |||||||| || |||||||| || ||||||| ||||| Sbjct 5133 CACACACGCCACGCCGACGCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGAGCTCGTG 5074 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 ||| || | | ||||||| || ||||| |||||||| |||||||||||| |||| Sbjct 5073 CTTCCTCGTCGCGATGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTG 5014 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGC 260091 ||| | ||| |||||| || ||||||||||| | || ||||| | ||||| || Sbjct 5013 CGCCATGATCAGCAAGGCCGCTGGCGGCATCGGCGTGCACGTTCACAACATCCGCGCTGC 4954 Query 260092 GGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGT 260151 ||| |||| | || |||||||||||| ||||||||||| ||||| ||||| || || Sbjct 4953 CGGCAGCTACATCGCCGGCACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGT 4894 Query 260152 TTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || |||| || |||||||| || ||| || Sbjct 4893 GTGGAATAACACCGCCCGCTACGTGGATCAGGGC 4860 Score = 159 bits (176), Expect = 5e-33 Identities = 350/522 (67%), Gaps = 20/522 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||||| ||||||||||||||||| ||| ||||| || ||||||||||||||| || Sbjct 4862 GGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATC 4803 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || ||| ||||| ||| ||||| |||| || | | |||||||| Sbjct 4802 TTCGGCTTCCTGCTGCTCAAGCGCAACACTGGCAA-GGAG-----GACCAGCGCGCGCGC 4749 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||||||| |||| ||||||||| ||||||||| | ||| || || Sbjct 4748 GACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATGCGCCGCGTCATGAGCGAGGGC 4689 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGC---GCCCGGCCTGCACGAATGCTATGGCGCG 262024 | ||| |||| | || || || | |||||||| ||| ||| |||| | Sbjct 4688 AAGTGGACGCTGATGGACC---CCAAGACCTGCCCCGGCCTCAGCGATGCCTACGGCGAG 4632 Query 262025 GCCTTTGACGCCCTCTATGA-GNNNNNNNNNNNNNNNNNNNNNNCG--CGGACCGTCGTG 262081 | |||||| ||| || || | || | ||| ||| | Sbjct 4631 GAGTTTGACCGCCTGTACGAGGACTACGAGGCGCGCGGCCTCGGCGTCCAGACGGTCCAG 4572 Query 262082 CCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 |||| | || | |||| ||||| ||| | |||| |||||||| ||| ||| | | Sbjct 4571 -GCGCAGG--AGCTGTGGTTCGCCATCCTCGAGTCCCAGATCGAGACGGGCGTGCCGTTC 4515 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACA 262201 ||| |||||||||||||| ||||| | |||||| ||||| | || |||| | | Sbjct 4514 ATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACATTGGTACCATCA-A 4456 Query 262202 GAG-GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTG 262260 | | ||||||||||||| ||||| || ||| ||||||| ||| | ||||| Sbjct 4455 GTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGCCGGAGGAGACGGCCGTGTG 4396 Query 262261 CAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTCATCCCCGA 262302 ||||||| | | | || ||||||||||||||| || ||| Sbjct 4395 CAACCTCGCCTCCATCGCGCTGCCCAAGTTTGTCGACCGCGA 4354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176821218334768