Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6703 132 5e-26 seq7095 114 1e-20 seq6353 105 7e-18 seq6343 100 3e-16 seq1748 93.3 4e-14 >seq6703 Length=6023 Score = 132 bits (146), Expect = 5e-26 Identities = 439/674 (65%), Gaps = 9/674 (1%) Strand=Plus/Minus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || ||||||||||||||||| ||| ||||||| || ||||||| || ||| | Sbjct 5054 GAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCATGATCAGCAAGGCC 4995 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | ||||| || || || |||| || || | ||||| ||| ||| ||||| | Sbjct 4994 GCTGGCGGCATCGGCGTGCACGTTCACAACATCCGCGCTGCCGGCAGCTACATCGCCGGC 4935 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 |||||||| | ||| ||| | | ||| ||| |||| |||| |||||| | | || Sbjct 4934 ACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGTGTGGAATAACACCGCCCGC 4875 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || || ||| || || |||||||| |||||| ||| | || | ||||||||| Sbjct 4874 TACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGG 4815 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || || ||||||| || || || |||| Sbjct 4814 CACGCCGACATCTTCGGCTTCCTGCTGCTCAAGCGCAACACTGGCAAGGAGGACCAGC-G 4756 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCAT-T 8089 |||||||| || |||| ||| | ||| | ||||| ||||| ||| | |||| |||| Sbjct 4755 CGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATGCGCCGCG-TCATGA 4697 Query 8090 TCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACG 8149 ||| | | ||| |||| ||| |||| | ||||| | | | | |||| Sbjct 4696 GCGAGGGCAAGTGGACGCTGATGGACCCCAAGACCTGCCCCGGCCTCAGCGATGCCTACG 4637 Query 8150 GTTCAAAATTTGAACAATTGTACAAACAATACGA-ACACGACGGCGCGTACGTGCGGCAA 8208 | | ||||| | ||||| | | ||||| | || |||| ||| | | Sbjct 4636 GCGAGGAGTTTGACCGCCTGTACGAGGACTACGAGGCGCG-CGGCCTCGGCGTCCAGACG 4578 Query 8209 GTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCG 8268 || | |||| || ||| |||||| |||| | || | ||| || || ||||| Sbjct 4577 GTCCAGGCGCAGGAGCTGTGGTTCGCCATCCTCGAGTCCCAGATCGAGACGGGCGTGCCG 4518 Query 8269 TACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATT 8328 | |||||| ||||| ||||| |||||| ||| || || | ||| | || ||||| Sbjct 4517 TTCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACATTGGTACCATC 4458 Query 8329 TGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTT 8388 ||| ||| |||||| | || ||| | |||||| |||| || || |||||| Sbjct 4457 AAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGCCGGAGGAGACGGCCGTG 4398 Query 8389 TGCAATCTAGCGTC 8402 ||||| || || || Sbjct 4397 TGCAACCTCGCCTC 4384 >seq7095 Length=227 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || |||||||||||| | | ||| | Sbjct 10 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGG 69 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 70 CCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCC 129 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 130 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCG 189 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 190 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6353 Length=6084 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||||||||| |||||||| ||||| || |||||||||||| | Sbjct 150 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || || || | ||||||||||| || || Sbjct 90 AGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 31 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 30 ATGCCCTCCTTGTCCTGGATCTT 8 >seq6343 Length=980 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||||||||| |||||||| ||||| || |||||||||||| | Sbjct 831 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 890 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || || | ||||||||||| || || Sbjct 891 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 950 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 951 ATGCCCTCCTTGTCCTGGATCTT 973 >seq1748 Length=1330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 226/334 (68%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACAT--GCTGTCGCAATTCATGCCCAACAGAT 21601 || |||||||| || |||||||| || ||| |||| || | ||||| || | ||| Sbjct 197 CGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTG-CG-AGTTCATCCCGATCAGCC 254 Query 21602 CGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATGG 21661 ||||| ||||| ||| || ||||| | |||||| | |||||| | |||| || Sbjct 255 GCACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATCT 314 Query 21662 CGTGTATTTCACCG-GCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAGAGA 21720 | | | || |||| || || ||| ||||| ||||||| || Sbjct 315 CCAGCACGCGCGCGCGCGG-CAGCCGGT------GCTTGATGTGGCTGTTGTACAGCAGG 367 Query 21721 CAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGA 21780 || ||||| | ||||||| |||||||||||||| || | |||||||||||||| ||| Sbjct 368 CACGCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGA 427 Query 21781 CCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTA-CCGGaaaaaaa 21839 |||||||| | || || || || | | || | | |||| | | | || || || || Sbjct 428 CCGGGCATCACGCCGCGCTTCTTCAGCCAGAACAGCG-CGCAGAACGACCCAGAGAAGAA 486 Query 21840 CACGCCCTCCACAATGGCGAACGCCACCATGCGC 21873 | ||||||||| ||||||| | | || |||| Sbjct 487 GATGCCCTCCACCGCGGCGAACCCGATCAGGCGC 520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505333557385280