Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6703 82.4 6e-11 >seq6703 Length=6023 Score = 82.4 bits (90), Expect = 6e-11 Identities = 224/342 (65%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 131741 AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA 131800 ||| | || ||||| || ||||| || || | ||||| || | ||||| ||||||||| Sbjct 4795 AAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTA 4854 Query 131801 ---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857 ||||| |||| || | || | |||| || | || |||| ||| ||| | | Sbjct 4855 CCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGG 4914 Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 ||||||| | | || ||||||| ||||||||||| || | ||| ||||||||| Sbjct 4915 CCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACG 4974 Query 131918 TTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977 | | || || || || || || ||| | ||||| | | || |||| ||| Sbjct 4975 TGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAG 5034 Query 131978 ATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG----TTG 132033 || || || | ||||||| | || |||| | ||||| ||| || ||| ||| Sbjct 5035 ATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTG 5094 Query 132034 GTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGT 132075 | | |||||||| || | || || |||||||||| Sbjct 5095 GGG----GTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424881243893568