Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6703 102 3e-16 >seq6703 Length=6023 Score = 102 bits (112), Expect = 3e-16 Identities = 355/541 (66%), Gaps = 16/541 (3%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || |||| || ||| || |||||||| ||||| || ||||| || ||| Sbjct 4907 CCGATGCTGCGGGTGTGGAATAACACCGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGC 4848 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || ||| || | ||||| ||||||||||||||||||| | ||| || ||| Sbjct 4847 AAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACA-TCTTCGG--CTTCCTG 4791 Query 255101 CTGTCCGA---CAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTC 255157 ||| | | ||| || |||| ||||| | | ||| |||||| ||| | || || Sbjct 4790 CTGCTCAAGCGCAACACTGGCAAGGAGGACCAGCGCGCGCGCGACCTCTTCTACGGCCTC 4731 Query 255158 TGGTGCTGCGATCTGTTTATGCGACGCGT--GGAACGAGACGAGACCTGGAGCCTCATGT 255215 ||| | ||| ||||| ||||| ||||| || |||| | | |||| || ||| Sbjct 4730 TGGATCCCCGACCTGTTCATGCGCCGCGTCATGAGCGAG--GGCAAGTGGACGCTGATGG 4673 Query 255216 GTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATC 255275 ||||| | ||||| || ||| | | || || |||||||| ||||| Sbjct 4672 ACCCCAAGACCTGCCCCGGCCTCAGCGATGCCTACGGCGAGGAGTTTGACCGCCTGTACG 4613 Query 255276 TGGAGTACGA-GCGTGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAAC 255334 ||| ||||| ||| | ||||| ||| | || | ||| || || | ||| | Sbjct 4612 AGGACTACGAGGCGCG-CGGCCTCGGCGTCCAGACGGTCCAGGCGCAGGAGCTGTGGTTC 4554 Query 255335 ACGATGGTGCGCAT-GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC-CACA 255392 | || | || | ||| | || || || |||||||| | | |||| ||| | Sbjct 4553 GCCATCCT-CGAGTCCCAGATCGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCCTG 4495 Query 255393 TAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCG 255452 || |||| ||||||||| || ||||| || |||| ||||||||||| | Sbjct 4494 CAACCGCA-AGTCGAACCAGAAGAACATTGGTACCATCAAGTGCTCCAACCTGTGCACGG 4436 Query 255453 AGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCGC 255512 |||||| | ||||||| || | ||| |||||| |||||| | || |||||| ||| Sbjct 4435 AGATTATCGAGTACACGTCGCCGGAGGAGACGGCCGTGTGCAACCTCGCCTCCATCGCGC 4376 Query 255513 T 255513 | Sbjct 4375 T 4375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588127121903480