Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6703 118 1e-21 seq1748 82.4 1e-10 >seq6703 Length=6023 Score = 118 bits (130), Expect = 1e-21 Identities = 558/878 (64%), Gaps = 25/878 (3%) Strand=Plus/Plus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 |||| |||| || || ||||| || || | ||||| || |||||||| ||| || Sbjct 4362 GACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGT 4421 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||| || || || | |||||| | ||| || || || | ||||| ||||| Sbjct 4422 GTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTT 4481 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| |||||| || ||||||||||||||| | ||| |||||||| |||| || Sbjct 4482 CGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGA 4541 Query 111400 TTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG 111458 | ||| || || ||| | | | ||| |||| || | | | | | || || Sbjct 4542 CTCGAGGATGGCGAACCACAGCTCCTGCGCCTGG-ACCGTCTGGACGCCGAGGCCGCGCG 4600 Query 111459 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTG 111518 ||||||| | ||| ||| ||||||||||| || || ||| ||| || | | Sbjct 4601 CCTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCC--GGG 4658 Query 111519 CCTTGTCT--GGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | |||| || | || | ||| ||| || | || | || || |||||| | Sbjct 4659 GCAGGTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCAT-GACGCGGCGCATGAACA 4717 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 |||| || ||||| ||| | ||||| || | || || || | || || Sbjct 4718 GGTCGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGT 4777 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 || | | | ||||| | | ||| || |||||||| |||||||| || || |||| Sbjct 4778 TGCGCTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGA 4837 Query 111696 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 | ||||| || || || | |||| || ||||| || ||| || | || | Sbjct 4838 AGGCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCC 4897 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA-TTG 111811 | ||||| || | | || | || || || || || | ||| || || Sbjct 4898 GCAGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCC-------GGCGATGTAGCTG 4950 Query 111812 ------GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 || | | | || | ||||| || || || ||||| ||| ||| Sbjct 4951 CCGGCAGCGCGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATG 5010 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 || |||||| | || || | ||||| |||| ||| ||||||||| | |||| ||| Sbjct 5011 GCGCACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGG 5070 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| | ||||||||| | || || || || |||||||| || || || ||||| Sbjct 5071 AAGCACGAGCTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGT 5130 Query 111986 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 || |||| || | ||||| |||||| ||| | || | ||||| | ||| Sbjct 5131 GTGTACATGCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCG 5190 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||||| || || ||||||| ||||| ||| || Sbjct 5191 TGAATGCCGACAGCCACACGCATGATCATGTGCTGCGG 5228 >seq1748 Length=1330 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| ||||| Sbjct 371 GCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCG 430 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || |||||||||| ||| | | |||||||| ||||| ||||||||||| Sbjct 431 GGCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATG 490 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 491 CCCTCCAC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627951423494400