Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6703 201 1e-46 seq1748 131 2e-25 >seq6703 Length=6023 Score = 201 bits (222), Expect = 1e-46 Identities = 935/1465 (64%), Gaps = 28/1465 (2%) Strand=Plus/Plus Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 118162 ||| || ||| ||| |||| ||| |||||| ||| || || || ||||| || Sbjct 3768 CCACAGGCCACGCTTGATGAGGTCCATCACGAGGAACTTGTTCACGACGGGGAACTCGCC 3827 Query 118163 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 118222 |||| ||| | | ||||| || | ||| | ||||| |||||||| ||||| || Sbjct 3828 GCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCC 3887 Query 118223 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 | || || | || ||||| || ||||| || |||| || || ||| || | || Sbjct 3888 GAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCC 3947 Query 118283 CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG 118342 | | | || || | |||||| || ||||||| | | | | ||| | || Sbjct 3948 CGTCGCGACAACACGCTTCTTGAGGGCCGCCCAGTCCCACCGGTCCGTCGTCGGCGGCTT 4007 Query 118343 C---CACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | |||| || |||||||| | || | ||||| || || || ||||| || Sbjct 4008 CTCCCACAGGTCGAACTGGAGCTTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTA 4067 Query 118400 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 | ||||| ||| |||| | || | || ||||| || |||| || || || || Sbjct 4068 CGCCCCCTCCACCGCCGCGAGGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTC 4127 Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 118519 || || | |||| || |||||| || || |||| || ||| | ||| Sbjct 4128 GAAGATCTCCTCGTTCAGCTGCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGAAT 4187 Query 118520 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 118579 || | ||||||||||| || || |||||||| | ||||| || | | | || || Sbjct 4188 GAAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTG--CTG 4245 Query 118580 C--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 | || || ||||| || || || | || | || || ||| | || || || | ||| Sbjct 4246 CGGCGGGCTGTCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTG 4305 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 | |||| || | | ||| | || || || || |||| | |||| Sbjct 4306 ATGTCCTTGGTCACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGACA 4365 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 |||| || || ||||| || || || || ||||| | ||||| ||| |||||| Sbjct 4366 AACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTAC 4425 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || ||||| |||||||||| ||| || | ||| ||||| || | |||||| || || ||| Sbjct 4426 TCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGAC 4485 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || ||| || || |||||||| |||||| | ||| |||||||| | ||||||| | Sbjct 4486 TTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCG 4545 Query 118878 AGAATAGCCTTCCAGACATCG-GCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTC 118936 || || || ||| | || || |||| || || | | | | || |||| Sbjct 4546 AGGATGGCGAACCACAGCTCCTGCGCCTGG-ACCGTCTGGACGCCGAGGCCGCGCGCCTC 4604 Query 118937 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT 118996 ||| | ||| ||| |||||||| || || ||| || ||| || || | Sbjct 4605 GTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGT 4664 Query 118997 ATCTGGGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 | ||| | || | ||| ||| || | ||| | | | || |||||| ||||| | Sbjct 4665 CTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATGACGCGGCG-CATGAACAGGTCGG 4723 Query 119056 GGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAG 119113 |||||||||| |||| ||||||| || || ||| | | || | | || || ||| | Sbjct 4724 GGATCCAGAG-GCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCG 4781 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 | | || ||| | | ||| || ||||||||||| || |||||||| |||| | Sbjct 4782 CTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGC 4841 Query 119174 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 ||||| || || || |||| | || || | || ||| || | || || || Sbjct 4842 GCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAG 4901 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCT 119288 ||| || | || || | ||| ||| || || || || || || | || Sbjct 4902 CATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGT-AG-CTGCCGGCAGCG 4959 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 | || | ||| | ||||| || || || || || ||| ||| ||||||||| Sbjct 4960 CGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCC 5019 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 |||| || ||||||| || ||||| ||| |||| | |||| ||||||||| | Sbjct 5020 TTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCA---C 5076 Query 119409 GA---CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 || ||| || ||| |||| || || ||||||||||| || || || ||||| || || Sbjct 5077 GAGCTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTAC 5136 Query 119466 ATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 119525 || || | ||||| |||||||||| | || | ||||| | |||||||| Sbjct 5137 ATGCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATG 5196 Query 119526 CCGATCGAGACCCGCATAAACATGT 119550 |||| | || ||||| | ||||| Sbjct 5197 CCGACAGCCACACGCATGATCATGT 5221 >seq1748 Length=1330 Score = 131 bits (144), Expect = 2e-25 Identities = 351/528 (66%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 80 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATG 139 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || |||||| | ||||| | | | || | | || | | || || || Sbjct 140 AAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTC-CTCGCCCAGCGACACAAGCAGGCG 198 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| || |||||||||||| | |||| || |||||||| ||||| || Sbjct 199 GTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGAGTTCATCCCGATCAGCCGCAC 258 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| |||||||| | | ||| ||| ||| || | | ||| | | Sbjct 259 CGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATCTCCAG 318 Query 129967 AATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGCAAA 130020 | | | | || | ||| | ||| | || ||| | || |||| |||| Sbjct 319 CACGCGCGCGCGCGGCAG--CCGGTGCTTGATGTGGCTGTTGTACAGCAGGCACG-CAAA 375 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| || |||||||| || |||||||| || || ||| |||||| ||||| Sbjct 376 GTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCGGGCAT 435 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || |||||||||| |||||| | ||| || || || |||||||||||||| ||||| Sbjct 436 CACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGCCCTC 495 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200 ||| |||||| | | || |||| | | ||| | || | | | |||| Sbjct 496 CACCGCGGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTCCCGATCCACCG 552 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || |||||||| ||||| | || ||| ||||||| ||||||||||| Sbjct 553 CAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618355854763840