Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6703 149 7e-31 seq1748 100 3e-16 >seq6703 Length=6023 Score = 149 bits (164), Expect = 7e-31 Identities = 678/1061 (64%), Gaps = 33/1061 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||||| |||| ||||| || | ||||| | || Sbjct 5228 CCGCAGCACATGATCATGCGTGTGGCTGTCGGCATTCACGGTGGCGACATGCAGCGGGTG 5169 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||| |||||| ||||| | || |||| || ||||| || || || |||||| Sbjct 5168 CGCGCGACCTACGACGCCATGTCGCGCGGCATGTACACACACGCCACGCCGACGCTCTTC 5109 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || ||| | |||||||| |||| | ||||||||| Sbjct 5108 AACGCCGGCACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTCGTCGCGATGAAGGAGGAC 5049 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||| |||| ||||| | || || | |||||| || ||| ||| ||||| Sbjct 5048 AGCATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCATGATCAGCAAGGCCGCTGGC 4989 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGC------CAA-TAAATCTCGTATTCGGGG 104514 || || || ||||| | || | | | || || || ||| | || Sbjct 4988 GGCATCGGCGTGCACGTTCACAACATCCGCGCTGCCGGCAGCTACATCGCC-------GG 4936 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || || | || | | || ||||| || || | || ||| || || Sbjct 4935 CACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGTGTGGAATAACACCGCCCG 4876 Query 104575 CTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| || |||| | || || || ||||| | |||| || || |||||||| || Sbjct 4875 CTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTG 4816 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || ||| | | ||||| | | | |||| || | ||||| ||| Sbjct 4815 GCACGCCGACATCTTCGGCTTCCTGCTGCTCAAGCGCAACACTGGCAAGGAGGACCAGCG 4756 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT--TGAG 104749 ||||| ||||||| || |||||||| || || || |||||| | || |||| Sbjct 4755 CGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATGCGCCGCGTCATGAG 4696 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCC--AGACAAGGCACCTGGTCTCTCCGATGCCG 104807 ||| ||||| ||| | || | || |||| | | | || ||| ||||||| Sbjct 4695 C-GAG-GGCAAGTGGACGCTGATGGACCCCAAGACCTGCCCC--GGCCTCAGCGATGCCT 4640 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC-GGGCGACTGCG 104866 || ||||||||||| ||| ||| | ||||||| || | |||| | | Sbjct 4639 ACGGCGAGGAGTTTGACCGCCTGTACGAGGACTACGAGGCGCGCGGCCTCGGCGTC-CAG 4581 Query 104867 ACGGTGCCAGCTGC-CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 ||||| |||| || || ||||| || || ||| |||| || | |||||| || Sbjct 4580 ACGGT-CCAGGCGCAGGAGCTGTGGTTCGCCATCCTCGAGTCCCAGATCGAGACGGGCGT 4522 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| |||||||| |||| ||| || || ||||| | ||| Sbjct 4521 GCCGTTCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACATTGGTAC 4462 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 |||||| | ||||| || || || || || | || | || || |||||||| Sbjct 4461 CATCAAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGCCGGAGGAGACGGC 4402 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--A 105103 ||||| |||||||| || ||||| || ||||||| ||| || | | || || | | Sbjct 4401 CGTGTGCAACCTCGCCTCCATCGCGCTGCCCAAGTTTGTCGA--CCGCGAGAAGGGCGTG 4344 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || || | | ||| || || || || |||| | ||||| |||| || Sbjct 4343 TTCGACCACCAGCTGCTCTACCGGGTGACCAAGGACATCACGTACAACCTCAACAAGGTC 4284 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| | || | ||||| || ||||| || || || | | | ||||| || Sbjct 4283 ATTGACCGCAACTACTACCCTGTCGAGACAGCCCGCCGCAGCAACACGCGCCACCGCCCC 4224 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 | || ||||| || |||||||||||||| | |||||||| Sbjct 4223 GTCGGCCTCGGCGTGCAGGGTCTCGCGGACGCCTTCATTCT 4183 >seq1748 Length=1330 Score = 100 bits (110), Expect = 3e-16 Identities = 190/279 (68%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| ||| || | | || ||||| || | Sbjct 645 GACACGTACATCACGGACAGCGAGGAGAAGCTGCACCTGCTGCACGCGATCCAGACGATC 586 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || |||| || || ||||| || |||| | | | || || | | Sbjct 585 CCGTGCATCCAGGAGAAGGCCGAGTGGGCGCTGCGGTGGATCGGGAGCGAGGCGAG---C 529 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || || || ||||| |||||||||||||| || ||| Sbjct 528 TTCCAGGAGCGCCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTC 469 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || | ||||| ||||| ||| ||||||| Sbjct 468 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAG 409 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 408 CTCATCTCGCGCGACGAGGGGCTGCACACGGACTTTGCG 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583185967639360