Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6703 250 3e-61 seq215 100 3e-16 >seq6703 Length=6023 Score = 250 bits (276), Expect = 3e-61 Identities = 530/774 (68%), Gaps = 28/774 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || || | || || ||||||| |||| | || ||| || || | ||| ||| Sbjct 5215 TCATGCGTGTGGCTGTCGGCATTCACGGTGGCGACATGCA-GCGGGTGCGCGCGACCTAC 5157 Query 53252 GACTTAATGA---GCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||| ||| || | |||| || ||||||||||| || || |||||||| || Sbjct 5156 GACGCCATGTCGCGCGGCATGTAC---ACACACGCCACGCCGACGCTCTTCAACGCCGGC 5100 Query 53309 ACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || | || |||||| |||| ||||||| || ||||||||||| ||| ||| Sbjct 5099 ACCCCCAAGCCGCAGATG---AGCTCGTGCTTCCTCGTCGCGATGAAGGAGGACAGCATC 5043 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 |||||||||||||| |||||||||||||| ||| ||| |||| | || || ||| Sbjct 5042 GACGGCATCTACGACACGCTCAAGGAGTGCGCCATGATCAGCAAGGCCGCTGGCGGCATC 4983 Query 53426 GGTATCCACTGCTCG-AACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGT 53484 || | ||| | || ||| |||| || ||||| ||| || || |||||| Sbjct 4982 GGCGTGCAC-GTTCACAACATCCGCGCTGCCGGCAGCTACATCGCCGGCACCAACGGCAC 4924 Query 53485 CGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCA 53544 | || | || ||||||| ||||| || || | || ||||| ||||| ||||| | || Sbjct 4923 CTCCAACGGCCTCGTGCCGATGCTGCGGGTGTGGAATAACACCGCCCGCTACGTGGATCA 4864 Query 53545 GGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 ||| || || ||||||||||| | |||||| | ||||| |||||||||||||||||||| Sbjct 4863 GGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACAT 4804 Query 53605 TATGGAGTTTCTCGAGCTGCGTC---TGAATCA-GGGTGACGAAGAGATGCGCTGCCGTG 53660 | | || || ||||| || | | || || | || || |||| || | Sbjct 4803 CTTCGGCTTCCT---GCTGC-TCAAGCGCAACACTGGCAAGGAGGACCAGCGCGCGCGCG 4748 Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 |||| || ||| || || ||||| || ||||| ||||||| || || || | Sbjct 4747 ACCTCTTCTACGGC-CTCTGGATCCCCGACCTGTTCATGCGCCGCGTCATGAGCGAGGGC 4689 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 ||||| |||||| ||| || |||||||||||| | || |||||| |||||| Sbjct 4688 AAGTGGACGCTGATGGACCCCAAGACCTGCCCCGGCCTCAGCGATGCCTACGGCGAGGAG 4629 Query 53780 TTTAACGAGATGTA-TCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||| || |||| |||| |||| | | |||| | | ||| |||| |||| Sbjct 4628 TTTGACCGCCTGTACGAGGAC-TACGAGGCGCGCGGCCTCGGCGTCCAGACGGTCCAGGC 4570 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 || ||| | ||| || |||||| || |||| | |||||||| ||||| |||| Sbjct 4569 GCAGGAGCTGTGGTTCGCCATCCTCGAGTCCCAGATCGAGACGGGCGTGCCGTTCATGCT 4510 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||||||| | |||| ||| |||||||||||||| || |||||| Sbjct 4509 CTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACATTGGTACCATCAA 4456 Score = 131 bits (144), Expect = 2e-25 Identities = 308/457 (67%), Gaps = 11/457 (2%) Strand=Plus/Minus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||| | |||||||| ||||| ||||||| ||||| ||||| |||||| | ||||| | Sbjct 3948 GGGCATGCGCAACTCGCTGCTGCTGGCGCCGATGCCGACCGCCTCGACGTCGCAGATTCT 3889 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 |||||||||||| |||||||| | ||| | ||||||||| | ||||| | || || Sbjct 3888 CGGCAACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTCCTCAG 3829 Query 55596 CAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGT 55655 | || ||||| | | | |||||| |||||| | |||||| ||| | || Sbjct 3828 C-GGCGAGTTCCCCGTCGTGAACAAGTTCCTCGTGATGGACCTCATCAAGCGTGGCCTGT 3770 Query 55656 GGAACCCG-CAGATCAAGACG-GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG- 55711 ||||| | | | | ||| ||| || | ||| || ||||| ||| | || Sbjct 3769 GGAACGAGACGGTGCGCAACGAGATCATCTCCCTCAAC---GGCTCCGTGCAGCAGGTGC 3713 Query 55712 --GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 | || || |||||| || | ||||| || ||||||||||| || ||| | Sbjct 3712 CCGGCATCCCGGACGACCTCAAGCAGCTCTACCGCACCGTGTGGGAGATCCCGCAGCGCA 3653 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 || ||||||||| || | || | |||||| |||||||||||||| || ||| Sbjct 3652 AGCTCATTGACATGGCGGCCGCGCGCGCCAAGTACATTGACCAGTCCCAGTCCCTCAACC 3593 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 ||||| | |||| || | || || | | ||| |||||||| || | ||| Sbjct 3592 TCTTCCTCGAGAGCCCGACGTCGGGGCAGATCACCTCCATGCACTTCCACTGCTGGCGCT 3533 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 || ||||||||||| |||||||| || || || || Sbjct 3532 CCGGCCTCAAGACGGGCATGTACTACCTCCGCACGCG 3496 >seq215 Length=4156 Score = 100 bits (110), Expect = 3e-16 Identities = 252/373 (68%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 |||||||| | ||| | ||| | | ||| |||||||| ||||| ||||| | ||| Sbjct 1874 GGCCAGTAGTGATCGATAAAGTTGATGATGAGGCCCTTGATGTGGGAGCCGTCGTGGTCC 1815 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTA 118102 ||||| ||||||||| ||| ||||||| || | | | | || || || Sbjct 1814 TGATCGGACATGATCATGAGGTGGCCGTAGCGCAGCCCGTCGACGCTGTCGTACTTCTGC 1755 Query 118103 CCATGTTGGAGCCCGAGGATCTTTTTAAGGT--TGGAAAATTCCTCATTTTCCGTCACCT 118160 | | | ||||| | |||||| | | | |||| ||||| | | |||||| Sbjct 1754 CGAATGTCCAGCCCCATGATCTTGATGACGGACTGGATC--TCCTCGCACTGCATCACCT 1697 Query 118161 GTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACT 118220 || | | ||||| || |||||| | ||||| || ||||| || ||||||||||| | Sbjct 1696 TCTTGAGCGACGCGTCGCGCACGTTGAGGGGCTTGCCGCGCAGCGGGAACACGCCAAAGT 1637 Query 118221 TGTCACGGCCCA-CAACGCTCAAGCCGGCAATAGCA-AGGGCCTTCGCCGAGTCACCCTC 118278 ||| ||| || || ||| || |||||| | ||| || | ||| || ||||||||||| Sbjct 1636 AGTCCCGGTCCTTCACCGC-CAGGCCGGCCGT-GCACAGCGTCTTGGCAGAGTCACCCTC 1579 Query 118279 GGTAATAATAAGAGTGCACTCGGTG-CTGCGATGAGTACCGGCCCAATTAGCATCATCCA 118337 || | || || ||||| ||||| ||||| | ||| ||| || || || |||| Sbjct 1578 CGTGAGGATTAGGGTGCAG-CGGTGGCTGCGCTTCCCACCCGCCTCGTTGGCGTCGTCCA 1520 Query 118338 GCTTCGGAACGCC 118350 ||||||| | ||| Sbjct 1519 GCTTCGGGATGCC 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547145792187200