Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6703 183 3e-41 seq7095 161 1e-34 seq6353 118 1e-21 seq1748 116 4e-21 seq6343 111 2e-19 >seq6703 Length=6023 Score = 183 bits (202), Expect = 3e-41 Identities = 788/1234 (64%), Gaps = 39/1234 (3%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACG 80599 |||||| |||| ||| | ||||||||||||| || || | |||||||||||||| Sbjct 4010 CCCACAGGTCGAACTGGAGCTTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTACG 4069 Query 80600 GGCCCTCCGTCTTGGCCAGCTC-AC--ACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 |||||| | || || || || ||||||| | ||||||| || || || Sbjct 4070 CCCCCTCCACCGCCGCGAGGTCCACGGACGACTCGACC---GCCGCGTAGTAGATCGTCT 4126 Query 80657 CAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATC 80715 | |||| ||| ||||| | || |||||| || |||||||| || || | | Sbjct 4127 CGAAGATCTCCTCGTTCAG-CTGCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGA 4185 Query 80716 ATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT 80775 ||||| |||| || || ||||| ||||||| | ||| |||||||||||| |||| Sbjct 4186 ATGAAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTG 4245 Query 80776 CGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 || ||| | | ||||| |||| || ||||| ||| |||||| || Sbjct 4246 CGGCGGGCTGTCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTG 4305 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC--------- 80886 | || || || | || ||| |||||| | |||||| Sbjct 4306 ATGTCCTTGGTCACCCGGTAGAGCAGCTGGTGGTCGAACACG---CCCTTCTCGCGGTCG 4362 Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 ||||| || || | ||| || || |||||||||||| ||| || | || Sbjct 4363 ACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTG 4422 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||||| || |||||||||| || || |||| || ||||| | ||| |||||||| Sbjct 4423 TACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTC 4482 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| |||||| |||||||||||| |||| |||| || ||||||| ||| ||| Sbjct 4483 GACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGAC 4542 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCC 81126 | |||||||||| ||| | ||| |||||| |||| || | | ||| ||| Sbjct 4543 TCGAGGATGGCGAACCACAGCTCCTGCGCCTGGACCGTCTGGACGCCGAGGCCGCGCGCC 4602 Query 81127 ACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186 | || | |||| ||| |||| | |||| || ||||| | ||||| Sbjct 4603 TCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAG 4662 Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246 || ||| |||||| ||| | | ||| || || |||||| ||| Sbjct 4663 GTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCG 4722 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG- 81305 |||||||||||| || ||| |||||||| |||| ||||| | || |||| | Sbjct 4723 GGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGC 4782 Query 81306 --GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATC 81363 | ||| | || ||| | | |||||| || ||||| ||||| || |||||||||| Sbjct 4783 TTGAGCAGC---AGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAG 4839 Query 81364 GACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGC 81420 | |||||||| || ||| ||||| | ||||| ||||| || || | || ||| Sbjct 4840 GCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGC 4899 Query 81421 AACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCG 81480 | ||| || | || || | || ||||| || || |||| || ||| Sbjct 4900 AGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCG 4959 Query 81481 CGCACCTTGCTGA--TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACC 81538 || | ||| ||| || | | |||||||| || | ||| ||| || ||| Sbjct 4960 CGGATGTTG-TGAACGTGCACG-CCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACT 5017 Query 81539 GGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT---GTCAAGCAAGAAAC 81595 || | || || || || || |||||||| || | ||||| | | || ||| | Sbjct 5018 CCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACG 5077 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 |||| |||||| || | | |||||| ||||| || || || || ||||| || Sbjct 5078 AGCT---CATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGT 5134 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAA 81715 | | | ||||| ||| ||||| | || || | || ||| ||||||||| Sbjct 5135 ACATGCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAA 5194 Query 81716 TACCGATAGCTACACGCATAAACATGTACTGGGG 81749 | |||| ||| |||||||| | ||||| ||| || Sbjct 5195 TGCCGACAGCCACACGCATGATCATGTGCTGCGG 5228 >seq7095 Length=227 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 168 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 167 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 108 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||| | || || || || ||||| || Sbjct 107 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAAC 48 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || |||| || |||||||| Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1 >seq6353 Length=6084 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGC 27542 |||||| || || |||||||||||||| || || || || |||||||| || || || || Sbjct 1 GAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGC 60 Query 27543 TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| |||||||| | || ||||| || ||||| || |||| ||||| ||||| Sbjct 61 CGGCAAGCAGCTCGAGGAGGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCAC 120 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || |||| || |||||||| Sbjct 121 GCTGCACCTCGTGCTGCGCCTCCGCGGTGG 150 >seq1748 Length=1330 Score = 116 bits (128), Expect = 4e-21 Identities = 283/424 (67%), Gaps = 11/424 (3%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| |||||||| ||||| | | |||||||| || ||||| ||| Sbjct 498 GTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGC 439 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 ||||||| |||||| |||| |||||||| ||||| || ||||||||||| ||| Sbjct 438 GTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACACG 379 Query 64858 GAATTTGCGGTTACC--CTGT---TCAGCCACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| ||||||| ||||| || | | | | | Sbjct 378 GACTTTGCG--TGCCTGCTGTACAACAGCCACATCAAGCACCGGCTGCCGCGCGCGCGCG 321 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || || || || | || ||||| |||| |||||| Sbjct 320 TGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGTTCAT--CTGCGACGCGCT 263 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||| ||| | | | |||| ||||| || || ||||| || Sbjct 262 GCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCGCAGTACATTGAGTTTGTGGC 203 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAATTCTTCAAATCCATTTGA 65090 || ||||||||| | | || || |||| || || | || || || || Sbjct 202 GGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTACAACTCGACGAACCCGTTCGA 143 Query 65091 CTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGA 65150 || ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || || Sbjct 142 CTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGA 83 Query 65151 TTAC 65154 ||| Sbjct 82 GTAC 79 >seq6343 Length=980 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || || |||||||| || || || || Sbjct 979 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCC 920 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || || || || ||||| || |||| ||||| ||||| Sbjct 919 GGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAACATCCAGAAGGAGTCCACG 860 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || |||| || |||||||| Sbjct 859 CTGCACCTCGTGCTGCGCCTCCGCGGTGG 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570237229175680