Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3136 147 2e-30 >seq3136 Length=15574 Score = 147 bits (162), Expect = 2e-30 Identities = 383/582 (66%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 || |||||||| |||||| || || || || | ||| ||||||||||| || || | Sbjct 812 TCAATGTGGTTGCGGTAGACGTGGGCGTCGCCGAGCGTGTGCACCAGCTCGCCCGGCTTC 871 Query 6608 AACCCCA-CGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 | |||| || | || ||||||| | ||||| || ||| || |||||||| || Sbjct 872 AGCCCCGTCGCCTTG-GCGATCAGGATGGTGAGAAGGCTGTAGGACGCGATGTTGAAGGG 930 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 || || | |||||||| | || || || || | |||||||| ||||| | | Sbjct 931 GACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACATTTGGCAGGAGAGCTCGCGGGTGTG 990 Query 6727 G------ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 | |||||||| || | | ||||||||||||||| ||||| | ||| | Sbjct 991 GGGGTTGACGTAGAACTGCGCCATGAGGTGGCACGGGGGGAGGGCCATGCGGCTGAGCGC 1050 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTC 6840 ||||||||| || | | || | | ||| | ||||| | | || || Sbjct 1051 GGCCGGGTTCCATGCCGTGAAGAGGAGGCGGCGGTCGTTCGGGTTGGTCCGGAGCGTCTC 1110 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 || | || | ||||||| | ||||| || |||| || ||| | | || Sbjct 1111 GACGATTGTCTTGATCTGGTCCACGCCCTGGCCGTCGTAGTTAGCGTCGTGCTTCGTGTA 1170 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 || || |||||||| | ||||||||| |||||||| ||||||| ||| |||||| Sbjct 1171 GTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCCATCTCCTCATA 1230 Query 6961 AGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 | || || || |||| || || || || || |||| |||||||||| | ||| Sbjct 1231 CTCGGTGAGGCCGCGGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATGTGCAC 1290 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 ||| | |||||| ||| | |||||| | || | || ||||| | |||||||| Sbjct 1291 GCCCTTGTCGGAGAGCAGCTTCGCGTTCGTCTCGCCGCGCAGAAACCAGATGAGCTCCTC 1350 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 | || ||||||||| | || || ||||||||||| || || Sbjct 1351 GCAGACCCCCTTCCAGAAGACGCGCTTCGTCGTCAGGAGAGG 1392 Score = 147 bits (162), Expect = 2e-30 Identities = 383/582 (66%), Gaps = 8/582 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || || ||||||||||| || || | ||||||||| || ||||||||| | ||||| Sbjct 1392 CCTCTCCTGACGACGAAGCGCGTCTTCTGGAAGGGGGTCTGCGAGGAGCTCATCTGGTTT 1333 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || | |||||| | ||| |||||| | ||| ||| | |||||||||| Sbjct 1332 CTGCGCGGCGAGACGAACGCGAAGCTGCTCTCCGACAAGGGCGTGCACATCTGGGACGGC 1273 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| || || || || || |||| || || || | |||||| ||| || Sbjct 1272 AACGGCTCCCGCGAGTTCCTCGACAGCCGCGGCCTCACCGAGTATGAGGAGATGGACCTG 1213 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | |||||||| || || || | | ||| || Sbjct 1212 GGCCCCGTCTACGGCTTCCAGTGGCGCCACTTTGGCGCCGACTACACGAAGCACGACGCT 1153 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| || ||||| | ||||||| | || | |||| || | | ||| Sbjct 1152 AACTACGACGGCCAGGGCGTGGACCAGATCAAGACAATCGTCGAGACGCTCCGGACCAAC 1093 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | ||| | | || | | || ||||||||| | ||| | ||||| Sbjct 1092 CCGAACGACCGCCGCCTCCTCTTCACGGCATGGAACCCGGCCGCGCTCAGCCGCATGGCC 1033 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT------CGCGAATGGGGAGCTGTCC 34636 ||||||||||||||| | | || |||||||| | | | ||||| ||| Sbjct 1032 CTCCCCCCGTGCCACCTCATGGCGCAGTTCTACGTCAACCCCCACACCCGCGAGCTCTCC 973 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||||| | || || || || | |||||||| | || || || |||||||| || Sbjct 972 TGCCAAATGTACCAGCGCTCCTGCGACATGGGCCTCGGCGTCCCCTTCAACATCGCGTCC 913 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCG-TGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||| || ||||| | ||||||| || | || |||| || || || |||||||| Sbjct 912 TACAGCCTTCTCACCATCCTGATCGC-CAAGGCGACGGGGCTGAAGCCGGGCGAGCTGGT 854 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 ||| ||| | || || || || |||||| |||||||| || Sbjct 853 GCACACGCTCGGCGACGCCCACGTCTACCGCAACCACATTGA 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448204887934080