Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7095 129 1e-24 seq8409 113 1e-19 >seq7095 Length=227 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||||||| ||| Sbjct 7 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTG 66 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || ||||| |||||||| || Sbjct 67 CGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCC 126 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| | ||||| || | Sbjct 127 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGG 186 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||||| |||| || || | ||| | ||||| Sbjct 187 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq8409 Length=5485 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 |||| || |||| |||| |||||| | ||||| || |||| || |||||||||| Sbjct 4103 TGGTGATTACCAATTTTATAACGTTTTAATTACTGCTCATGGTTTGATTATGATTTTTGC 4162 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 ||| ||||||| |||||||| || || || | |||| || ||||| ||||| ||| Sbjct 4163 TTTCATTATGCCTGTTATGATGGGTGGATTGGCTAATTACTTTATTCCTGTAATGTGTGG 4222 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTG 7706 | |||||||||||| ||||| || | || ||||| |||||||| Sbjct 4223 TTTTCCTGATATGGCCTTTCCTAGATTAAATAATATGAGTTTTTG 4267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192374373203216