Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6512 98.7 8e-16 >seq6512 Length=2066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 112/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || ||||||||||| |||| | |||||| || ||||| || ||| | || | | Sbjct 1121 ATTGGCGACAAGTTCTGCAGTCGTCACGGT-CAGAAGGGTACCAACGGTATTCAGTTCCG 1063 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 | ||||||||||||||||| || ||||| | ||||||||||||||||||||||| Sbjct 1062 CC--AGGAGGACATGCCCTTCAACCGCGACGGTATTGTGCCCGACCTCATCATCAACCCT 1005 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| |||||||| | |||||||| Sbjct 1004 CACGCTATTCCCTCCCGTATGACGGT 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406112392029904