Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7095 170 4e-37 seq6353 104 5e-17 seq6343 104 5e-17 seq1748 95.1 3e-14 seq2458 87.8 4e-12 seq215 86.0 1e-11 >seq7095 Length=227 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || |||||||||| || || ||||| |||| Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6353 Length=6084 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | |||| || || |||||||||||||| || Sbjct 151 ACCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 92 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||| | || || || || || Sbjct 91 CAGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 32 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||||||| |||||||| || || Sbjct 31 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 2 >seq6343 Length=980 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | |||| || || |||||||||||||| || Sbjct 830 ACCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 889 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||| | || || || || || Sbjct 890 CAGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 949 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||||||| |||||||| || || Sbjct 950 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 979 >seq1748 Length=1330 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||| ||||| | | || |||| | Sbjct 282 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCG 223 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || || || || || || | | ||| |||| || | ||||| || Sbjct 222 CAGTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTAC 163 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||||| | |||||| |||| || |||||| | || || || ||||| || || |||||| Sbjct 162 AACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 103 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| ||| |||| || || ||||| Sbjct 102 TTCGAGAAGAAGGTCGGCGAGTACCAGAAGGC 71 >seq2458 Length=16887 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCT-GGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 || |||||||| | ||| | ||| | ||| ||||| || || ||| ||| ||| || Sbjct 13439 AGCTTCGTGAAGACGTAGCGCGGCGC-CGCGTGGTCGTTACCGAGCTGCTGCCGCGAGCC 13497 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCAT 273892 ||||| ||||| |||| ||| |||| |||||||||| ||| | | | ||| ||||| Sbjct 13498 GAACTGGCCCTCCGGCACCAGCAAGTTGATGTTGTTGCCGCCGGTGAAGTTCTGTGCCAT 13557 Query 273893 ATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGG-CGCTGTGTTCGGCGA 273951 || | || ||| | || || || |||||||||||||| ||| ||| || ||| || Sbjct 13558 TTTGATTATCGTCTCTTGCAGCGACACCTCGCCGTGGTGGAAGGACGCCGT-CTCGCTGA 13616 Query 273952 TATAACCACTGAACTGAGCAACCTTC 273977 | || || | ||| || |||||| Sbjct 13617 TGTAGCCGGACAGCTGCGCTACCTTC 13642 >seq215 Length=4156 Score = 86.0 bits (94), Expect = 1e-11 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAAC 273831 ||| || ||||||||||| | | | | || | |||||||| || || ||||||| || || Sbjct 2628 CAGCTTTGTGAAAATGTATC-GCCCCGCGGCGTGGTCCTTACCGCCCTGCAGCCGCGTAC 2570 Query 273832 CAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 | |||||||| || || | ||| | ||||| ||||| | ||||| |||| Sbjct 2569 CGAACTGACCGTCCTGCTGCAGCAGCGGCACATTGTTCGAGCCGACAAAGTCCTGTGCCA 2510 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 | |||||| ||| | ||||| |||||||||||| ||||| ||| || | || Sbjct 2509 TGGCCACGATCGTCTGCACGAGGGACTGCTCGCCGTGGTGGTAGGCCGAGTGCTCCGAGA 2450 Query 273952 TATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAAT 274011 ||||| || ||| | ||||| | || ||| ||| |||||||| || Sbjct 2449 CGTAACCGGAGAGCTGCACGACCTTGATGGAGCGGTTCAGGTTGCGCTTGAAGCACGAGA 2390 Query 274012 ACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAA 274047 | | | ||| ||||| ||||||||| || |||| Sbjct 2389 AGAGGATCTTGCGCTGGCCGGGCTTGAAGCCGTCAA 2354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046601545944656