Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7095 140 8e-28 seq6343 104 6e-17 seq6353 100 7e-16 >seq7095 Length=227 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||| |||||||| ||| Sbjct 224 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC--- 168 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || || || ||||||||| Sbjct 167 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 108 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || |||||||| || || | ||||| ||||| || ||| Sbjct 107 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAAC 48 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTCGT 19 >seq6343 Length=980 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||| ||||| || || ||||||||||| || Sbjct 973 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAG 914 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | ||||| ||||| || ||| |||| || || || || ||||| Sbjct 913 CAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 854 Query 178125 CTTGT 178129 || || Sbjct 853 CTCGT 849 >seq6353 Length=6084 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||| ||||| || || ||||||||||| || Sbjct 8 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAG 67 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || ||||| || ||| |||| || || || || ||||| Sbjct 68 CAGCTCGAGGAGGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 127 Query 178125 CTTGT 178129 || || Sbjct 128 CTCGT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203572900319216