Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7095 176 4e-39 seq6353 134 1e-26 seq6343 129 5e-25 >seq7095 Length=227 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || |||||||| ||||||||| ||||| ||||||| Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||||||||| ||||||| ||| Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||||||| ||||||| Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||||| || || ||||||||||| ||||| |||||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6353 Length=6084 Score = 134 bits (148), Expect = 1e-26 Identities = 121/151 (80%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || ||||| || || | ||| || ||||||||| ||||||||| ||||| | Sbjct 157 CATCACA-CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 99 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||||| |||||||| | || |||||||||||||||||||| || |||||||| || | Sbjct 98 AGTCGGCCAGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGAT 39 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||| ||| | || |||||||||| ||| || Sbjct 38 CCGGGGGGATGCCCTCCTTGTCCTGGATCTT 8 >seq6343 Length=980 Score = 129 bits (142), Expect = 5e-25 Identities = 120/151 (79%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || ||||| || || | ||| || ||||||||| ||||||||| ||||| | Sbjct 824 CATCACA-CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 882 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||||| || ||||| | || |||||||||||||||||||| || |||||||| || | Sbjct 883 AGTCGGCCAGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGAT 942 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||| ||| | || |||||||||| ||| || Sbjct 943 CCGGGGGGATGCCCTCCTTGTCCTGGATCTT 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244686396800