Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq157 410 1e-109 seq1037 147 2e-30 >seq157 Length=1104 Score = 410 bits (454), Expect = 1e-109 Identities = 618/862 (72%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 1020 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 961 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 960 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 901 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 900 GGCAACGACATGAAGGACTGGGCGGCGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 842 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| ||| ||||||||| | |||| || Sbjct 841 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCGTCGAGAATCTTGCGCAGCGCTT 782 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 781 C-ATGAGCGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 723 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 722 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 664 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| || ||||||| |||||| || | |||||| ||| Sbjct 663 GAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAGGAAGGCGGAG 604 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | |||| Sbjct 603 TGGGCCGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATAGGCTTC 547 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || || ||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 546 GCTGCGGTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 487 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | ||||||||||| Sbjct 486 CGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTA 427 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCG-AGCGCGGC 117228 || ||||| || || |||||| ||| ||| | ||| || | |||| | Sbjct 426 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGC-GA 368 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGC-AGCGCTTCCTCACCGAAG 117287 |||||| ||||||| | || ||||| |||||||| || | ||| || || | Sbjct 367 GCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGAGAG-TTCATCTGTGACG 309 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||||| ||| | || | || || ||| |||| ||||||||||||| Sbjct 308 CGCTGCCGGTGCGGCTGATTGGCATGAACGCAGAGCTCATGGCGCAGTACATCGAGTTCG 249 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| ||||||| | ||| | || | |||||||||||| || | | ||| Sbjct 248 TCGCGGACCGGCTGCTTGTATCGCTCGGCGAGGAGAAGCACTACAACTCGACGCAGCCGT 189 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 188 TCGACTTCATGGAGATGATCTC 167 >seq1037 Length=20842 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 17296 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 17237 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 17236 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 17178 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 17177 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGTCGGACTACAA 17118 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||||||||| || ||| ||||| || | ||||||| Sbjct 17117 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 17068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202281489520