Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1681 354 7e-93 seq157 196 4e-45 seq1037 91.5 1e-13 >seq1681 Length=36401 Score = 354 bits (392), Expect = 7e-93 Identities = 558/791 (71%), Gaps = 6/791 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || ||||| || ||| ||| | ||||||||||| |||||||| Sbjct 1438 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATTTCC 1497 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || ||||| || ||||| |||||||| | ||| ||||||| || | ||||| Sbjct 1498 GTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCAT 1557 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||| ||| ||||| |||||||||| ||||||||||| ||| || | Sbjct 1558 GCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAAC 1617 Query 23201 CACATAGTCTGAGCGTGAACACGTCGC-ACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| ||| | ||| || |||||| | ||| Sbjct 1618 CACACCTCCTGGGCCTGGAT-CGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTA 1676 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACA 23318 | | ||||| || |||| || || ||| || || |||| || ||||| || Sbjct 1677 GAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGT-TCGGATCCA 1735 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| || || ||| || || |||||||| ||||| || ||||| || | Sbjct 1736 TCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCG 1795 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || |||||||||||| || || || || ||||| ||||| || || Sbjct 1796 CGTAGAAGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAA 1855 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || | ||| |||||||| |||||||| || ||||| || |||||| | |||| Sbjct 1856 AGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTAC 1915 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||||||||| || ||||| ||||| ||||||||| | || | |||||| |||||||| | Sbjct 1916 CGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCC 1975 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 |||| |||| |||| ||| || | || || || | ||||| |||| Sbjct 1976 CGTTCGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGT 2035 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | | ||| ||||| ||| | | ||| |||| || || | || || |||||||||| Sbjct 2036 GCAGACCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGA 2095 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC-GCTTTG 23737 |||| |||||||||||||| || | ||| |||| ||| ||||| ||||||| |||||| Sbjct 2096 TGCCGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTTG 2155 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || || |||| || || |||||| ||||||| || ||| | || || ||||| || Sbjct 2156 GG-GTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTGACATGAGG 2214 Query 23798 TTGTACGTGTC 23808 | ||||| || Sbjct 2215 TCATACGTCTC 2225 >seq157 Length=1104 Score = 196 bits (216), Expect = 4e-45 Identities = 509/762 (67%), Gaps = 18/762 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || |||||| | || || ||||||| ||| || || || ||||||| | Sbjct 852 TTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCGTCGAGAATCTT 793 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || | ||| | ||| | |||||| | || ||||| || | Sbjct 792 G-CGCA-GCGCTTCATGAGCGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCC 735 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | ||| || | || | || |||||| | | Sbjct 734 AGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCA 675 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCC 57914 ||||| ||| ||||| | | ||| | ||||||| | || || |||| | ||| Sbjct 674 CGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGAT-CCCGTGCATCCAG 616 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 | |||||| |||||| | | ||||| ||| | || | ||| ||| || Sbjct 615 AGGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGCT--TTCAG-GAGCGG 559 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATT 58033 || || | ||||| || || ||||| || |||||||| ||| | | |||| | | || Sbjct 558 CTGATAGGCTTCGCTGCGGTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGCG-CGCTGTT 500 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||| Sbjct 499 CTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCG 440 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAA 58150 |||||||||||| || || || || || ||||| ||| |||| ||||| | || Sbjct 439 CGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAA 380 Query 58151 ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 || | |||| || ||| | |||| || || || ||||| ||||| ||||| Sbjct 379 ACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTT 320 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 || || || || |||||| || | || |||||| || | ||| | |||| Sbjct 319 CATCTGTGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCAGAGCTCATGGCGCAGTA 260 Query 58271 CATTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||| ||||| || || ||| | || || ||| | | ||||| || |||||| Sbjct 259 CATCGAGTTCGTCGCGGACCGGCTGCTTGTATCGCTCGGCGAGGAGA--AGCACTACAAC 202 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 ||| | ||||| || || ||| | |||||||||| |||||||||| ||||| || Sbjct 201 TCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTT 142 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || || || | || || || || ||||||||||||| Sbjct 141 GAGAAGAAGGTGGGTGAGTACCAGAAGGCCGGCGTGATGAGC 100 >seq1037 Length=20842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 17297 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 17238 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 17237 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 17178 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| || || || || || || Sbjct 17177 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGTCGGACTACAA 17118 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | ||| | ||||| Sbjct 17117 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 17070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751762145840