Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2242 159 3e-34 >seq2242 Length=10277 Score = 159 bits (176), Expect = 3e-34 Identities = 291/419 (69%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 |||| ||| | |||| || ||| ||||||||||| || | ||||||||||| || || Sbjct 3528 AGGGCATCGATGTGGCTGCGGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCA 3469 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||| ||||| | | || || ||| || || || |||||| ||||||||| Sbjct 3468 GGCCGCAGACCCGTCGCCTTGGCAATGAGAATGGTGAGCAGCGCGTAGGAGGCGATGTTG 3409 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC---- 21100 || ||||| ||||||||||||||| || | ||||||||| |||||| ||||| Sbjct 3408 AAGGGGACGCCGAGGCCCATGTCGCACGAACGTTGGTACAGCATGCAGGATAGCTCGCTC 3349 Query 21101 -CCCCCGAG-CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGC 21157 | ||| | |||||| || ||| | | ||| || || || || |||||| | || Sbjct 3348 TTCTCCGTGTTCACGTAGAATTGAGCGAGCAAGTGGCACGGCGGCAGTGCCATCTTGTGC 3289 Query 21158 GAGGTCCGCG---GGGTTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCGCCTG 21212 || |||| ||||||||||| | | || || || |||| ||| |||| Sbjct 3288 -AG---CGCGCACGGGTTCCACGCAGTGAACAGGAGACGGCGGTCGTTCGGGTTCGCC-- 3235 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || || ||||| | | | | |||||||||||||| || |||||||| || ||| Sbjct 3234 TTGATCGTCTCCACGATGAACTTGATCTGGTCCACCCCCTCGCCGTCGTAGTTCGCTTCG 3175 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 ||||| ||| || ||||| || || | ||||||||| ||||| || || || || || Sbjct 3174 AGCCCCCGGTATTCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTC 3116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427762304082960