Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq157 150 3e-31 seq1681 125 1e-23 >seq157 Length=1104 Score = 150 bits (166), Expect = 3e-31 Identities = 582/892 (65%), Gaps = 42/892 (5%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 985 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 926 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| | | | ||| Sbjct 925 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCGGCGC---TGAA 869 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| ||| || || Sbjct 868 CGACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 809 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 808 AGTCGTCGAGAATCTTGCGCAGCGCTTCATGAGCGATGTGAAGGTGCCAGAGGCG-CGCG 750 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 749 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 690 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | ||| | |||| || | ||| Sbjct 689 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACG 631 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | | ||||| | |||| | |||||||||| | | | || Sbjct 630 ATCCCGTGCATCCAGAGGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGC 571 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | ||||| || || || ||||| |||||||| |||| Sbjct 570 TTTCAGGAGCGG-----CTGATAGGCTTCGCTGCGGTGGAAGGCATTTTCTTTTCCGGGT 516 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 515 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGC 457 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----T 125584 |||||| | || || || |||||||| |||||| ||||| || || |||| Sbjct 456 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAAC 397 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 ||||| ||| | | | ||| | | |||| | || || |||||| Sbjct 396 TCGCA--CATC-AAGCACAAACTGCCGCGCGAGCG-CGTGCTGGAGAT---CATTGT--- 347 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||||| |||| || || | |||||| | || | || ||||| | ||||||| Sbjct 346 GGATGCGGTGAACATCGAGCGAGAGTTCATCTGTGACGCGCTGCCGGTGCGGCTGATTGG 287 Query 125705 CATGAACTGCA-AGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTA 125761 ||||||| ||| |||| ||| ||| ||||||| ||||| || || || || || | |||| Sbjct 286 CATGAAC-GCAGAGCTCATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTA 229 Query 125762 CGAGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | | | ||| ||| |||||| | | | | || || || |||||| | Sbjct 228 ----TCGCTCGGCGAGGAGAAGCACTACAACTCGACGCAGCCGTTCGACTTCATGGAGAT 173 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||| ||||| || ||||||||||| | |||||| Sbjct 172 GATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGGTGAGTAC 121 >seq1681 Length=36401 Score = 125 bits (138), Expect = 1e-23 Identities = 315/475 (66%), Gaps = 8/475 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| ||| || |||||| | |||||||| | || || ||||| || ||| Sbjct 1925 CAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGGCATGCCGAC 1866 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 | |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 1865 ATCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAGGATGACCAGCGCGCCCGC 1809 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || || ||| | |||||| |||| |||| ||| || || || || Sbjct 1808 GACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGGGA 1749 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| || || ||| || ||||| |||||||| || || ||| Sbjct 1748 AAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAGGAG 1689 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGC 97171 |||||| ||| | ||||||| |||||||| ||| | ||||| || | || Sbjct 1688 TTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAGGC 1630 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| |||||| | | | ||| | ||||| || |||| ||| || Sbjct 1629 CCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCCGTTCATCCT 1570 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | || |||| ||||| | | ||||| |||||| |||| Sbjct 1569 CTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGATCAAGTGCTC 1510 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || || |||||||||||||| |||||| | || ||| | |||||||| || ||| Sbjct 1509 GAACCTATGCACGGAAATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGC 1455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741034865468520