Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1681 203 8e-47 >seq1681 Length=36401 Score = 203 bits (224), Expect = 8e-47 Identities = 583/885 (66%), Gaps = 30/885 (3%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 || || || || || ||||| ||||| |||||||| ||| |||| || || || | ||| Sbjct 2300 ATCGTGGAGCGTCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCACAGAT 2241 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 | | | | ||| || ||| | || || ||| ||| | ||||| ||||| Sbjct 2240 CTGAAGAATGTGCGTGAGACGTATGACCTCATGTCAAAGGGCT----TCTTCACCCACGC 2185 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | || || || || | || || || ||| || ||||| || | Sbjct 2184 CACCCCGACCCTCTTTAACGCCGGCACCCCAAAGCCGCAAATGAGCTCGTGCTTCCTGGT 2125 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 |||||| || |||||| || |||| ||||| || ||| | ||||| | || Sbjct 2124 GGCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGAT 2065 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTA 363737 ||| || ||||| |||||| | | |||||| | || || ||| || Sbjct 2064 CAGCAAAGCAGCCGGCGGCATTGGTCTGCACGTGCACAATATCCGCGCTGCTGGCAGCTA 2005 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| ||||| || ||||| ||||| || || ||||| || || || |||| Sbjct 2004 CATAGCTGGCACCAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAA 1945 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 || || | ||||| |||||||| || || |||||||| || || || || | ||||| Sbjct 1944 CACCGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCT 1885 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGGGAAA 363914 |||||| |||||||| || |||| ||||| ||| | |||| ||||||||||| Sbjct 1884 CGAGCCCTGGCATGCCGACATCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAA 1828 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 || || ||| || || || || ||||| || || ||| | | || | ||||||| Sbjct 1827 GGATGACCAGCGCGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAG 1768 Query 363975 GCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTT--TTGCCCACACGAATGTCCAGGTC 364030 ||| ||| || ||| | || ||| | || | | | ||||| || || |||| Sbjct 1767 GCGTGTGAAAAGCGAGGGA--AAGTGGACGCTGATGGATCCGAACACG--TGCCCGGGTC 1712 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | |||| | ||||| || | || || ||||| || || || ||||| Sbjct 1711 TCAGCGATTGCTATGGTGAGGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGG-C 1653 Query 364091 AGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 | ||| ||||| || | || ||| || | |||||||||||| | || |||||||| Sbjct 1652 CGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATC 1593 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 ||||| || || | || | ||||| || | |||||| ||||||| |||||| || Sbjct 1592 GAGACGGGGGGGCCGTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAG 1533 Query 364210 CACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCGCT 364266 | || || || | ||| || || |||||||| || || ||| | || ||||| | Sbjct 1532 AATCTCGGCACGA-TCA--AGTGCTCGAACCTATGCACGGAAATTGTCGAGTACACGTCG 1476 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 || | ||||| || || || ||||| || || |||||||| ||| Sbjct 1475 CCGCAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCGCTGCCG 1431 Score = 87.8 bits (96), Expect = 5e-12 Identities = 282/433 (65%), Gaps = 16/433 (4%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||| || | || |||||||| || || ||||| | ||||| ||||| ||| Sbjct 998 CGCAACTCACTGCTGGTTGCCCCCATGCCAACCGCGTCTACCTCGCAGATTCTCGGCAAC 939 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || ||||| || || ||| || Sbjct 938 AACGAGTGCTTCGAGCCCTTCACCTCAAACATCTACGTCCGCCGTGTGCTGAGCGGCGAG 879 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || || || || || |||||||| |||| ||| || || || || || ||| || Sbjct 878 TTCCCTGTTGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGTCTATGGAACGAG 819 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||| |||| | |||||| || || || ||| | | | ||| || | || Sbjct 818 TCGATGCGGAACGAGATCATCTCCTACAACGGCTCTATCCTCACTATTAACGGCATCCCG 759 Query 364972 GAAGATCTGA---AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || |||| ||| ||||| ||||| ||||| ||| | ||| | || || Sbjct 758 GACGACCTGAGAGAGC---TTTACCGGACCGTGTGGGAGATTCCGCAGCGCAAGCTGATA 702 Query 365029 GATATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 || ||||| ||| |||| || | || | | ||| |||||||| ||| | || Sbjct 701 GACATGGCACGCGACCGCGGCCAGTACATTGACCAGTC----GCAGTCGTTGAACCTCTT 646 Query 365085 CATGACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 | | | || || ||||||| || | || ||||||| ||||| | ||| | | | Sbjct 645 CCT-CCAGAGCCCCACCTCCGGTCAGATCACGTCCATGCTCTTCTATTGCTGGGAGGCTG 587 Query 365144 GTCTTAAGACAGG 365156 | || |||||||| Sbjct 586 GACTGAAGACAGG 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303309731154314