Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1681 291 8e-74 seq157 134 1e-26 seq1037 107 2e-18 >seq1681 Length=36401 Score = 291 bits (322), Expect = 8e-74 Identities = 956/1455 (66%), Gaps = 43/1455 (3%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || || | ||||||||| || |||||| || | || | ||| || || Sbjct 858 GTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTTGAGGT 917 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 |||||| || || ||||||| ||||| || || || | ||| | ||||| |||||| Sbjct 918 GAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAGACGCGGTTGGCATGGG 977 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || |||| | ||| ||||||||||| || | | | | ||||| || | |||| Sbjct 978 GGCAACCAGCAGTGAGTTGCGCAGGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCA 1037 Query 145231 ATCCCATAG--CGAAGTCGG-CCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || || || | || | ||||||||| |||||| ||||||||| Sbjct 1038 GTCCCAGCGACCGCTGTTGGGCCGCGGGTTCTTCCACATGTCGAACTGCAGAATGCCCTC 1097 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACT 145344 |||||| |||||||| | |||| ||| |||| || || || || || | Sbjct 1098 GCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCAGTTC-CATCG 1156 Query 145345 -CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| | || | || ||||| || ||| || | ||| | | || ||| | Sbjct 1157 ACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCT 1216 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | | |||||| |||| || | || || || ||||||||||| | || | Sbjct 1217 CCGCCGAGACAAACGGCAGCCGCATGAGAATGAAGGCGTCCGCGAGCCCCTGCACGCCGA 1276 Query 145464 CGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTAC 145523 ||||||||| || | |||||| || | ||||| ||||| || || || | Sbjct 1277 GGCCGATGGGACGGTTGCGCATGTTACTGTGGCGCGCCGTCTCGACCGGGTAGTAGTTGC 1336 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTT 145580 ||||||||| || | ||| ||| | | |||||| | ||| | | || | Sbjct 1337 GGTCGATAACGCGGTTTAGGTTGCGCGTGATTTGCTTTGTCACGGTGTAGAGAAGCTGGT 1396 Query 145581 CAAAGTCAAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAA 145639 || ||| || || || |||||| | || ||| | ||||| || || | Sbjct 1397 G---GTTGAACTCGCGCTTC-TCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAGG 1452 Query 145640 TTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCT 145698 || || || |||||||||| ||||| || |||| | || || || | ||| | || Sbjct 1453 TTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATTTCCGTGCATAGGTTCGA 1511 Query 145699 ACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAG 145758 || ||||| || || ||||| | ||| || || |||||||| |||||||||||||| Sbjct 1512 GCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAG 1571 Query 145759 CATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGC 145816 ||| |||| || || ||||| | ||||| ||| | ||| |||| || ||||| Sbjct 1572 GATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAACCA--CACCTCCTGG 1629 Query 145817 GCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAAC 145876 || | | | || | ||||||||| ||||| | ||||||| ||||||| Sbjct 1630 GCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAAC 1689 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | ||| ||||||||| || || || ||| |||| ||| |||||||| ||| Sbjct 1690 TCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGATCCATCAGCGTCCACTTT 1749 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 || | | || || ||| |||||||| |||||| | |||||||||||| | | |||| Sbjct 1750 CCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCG 1809 Query 145997 C--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGT 146054 | |||| || || || ||| |||| || |||| || | | | |||||| Sbjct 1810 CGGGCGCGCTG--GTCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGT 1867 Query 146055 CCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGT 146111 | || ||||| || || | ||||||||||| || || || || || ||| ||||||| Sbjct 1868 CGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCGCTTACCGCCGCCCTGGT 1927 Query 146112 CCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGC 146171 |||||| || | ||||||| |||||||| | ||| ||| ||| ||| | | || Sbjct 1928 CCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGC 1987 Query 146172 CGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGAC 146231 |||| || ||| | |||| | ||| | || || | || || | | Sbjct 1988 CGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTGCACGTGCAGACCAATGC 2047 Query 146232 CGCCGCCGTACTTGGAT-ATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG 146290 ||||| | | ||| | | || |||| || || |||||| |||||||||||||| ||| Sbjct 2048 CGCCGGC-TGCTTTGCTGATCACGGCACACTCCTTGAGCGTGTCGTAGATGCCGTCGATG 2106 Query 146291 CTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCG 146348 || || ||||| | ||| | ||| |||||||||| ||| |||| | | || || || | Sbjct 2107 CTGTCCTCCTTCG-ACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTTGGGGTGCCGG 2164 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGTAAACA--TTTTTCGGCTCATCATCCGATACGT 146406 | || | |||||| | ||||| || || | || | ||| | |||||| Sbjct 2165 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTG--ACATGAGGTCATACGT 2222 Query 146407 TTC-GATAGCGTCTTGA-ATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATG 146464 || | |||| | || | || ||| |||||||| | |||||| ||||||| ||| Sbjct 2223 CTCACGCACATTCTTCAGATCT-GT-GCCGTGAATGCCAAGAGCGACACGCATGAACATC 2280 Query 146465 TGTTGGGGCCGCTCC 146479 || || || |||||| Sbjct 2281 TGCTGTGGACGCTCC 2295 >seq157 Length=1104 Score = 134 bits (148), Expect = 1e-26 Identities = 250/359 (70%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 46240 ATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGAC 46299 ||||| || |||||||| ||||||||||| || |||||||||||||| || || |||||| Sbjct 477 ATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 418 Query 46300 TTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTG 46359 || || || || || ||| | | | | | |||| || ||| ||| ||||||| Sbjct 417 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTG 358 Query 46360 AGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCT 46419 || | ||| |||||| ||| ||| ||||| | | ||| ||||| | | Sbjct 357 GAGATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTCATCTGTGACGCGCTGCCGG-T 299 Query 46420 GCC-CTGCTGGGCATGAACGCACAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACC 46477 || ||| | |||||||||||| || ||| ||| | ||||||||||| || ||||||| Sbjct 298 GCGGCTGATTGGCATGAACGCAGAGCTCATG-GCGCAGTACATCGAGTTCGTCGCGGACC 240 Query 46478 GACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTT 46536 | ||||| || ||| | || |||||| | || || ||| | || || || || Sbjct 239 GGCTGCTTGTATCGCTCGGCGAGGAGAAGCACTACAACTCGACGC-AGCCGTTCGACTTC 181 Query 46537 ATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| | | ||||| ||| ||||||| || || || || || ||| || || ||||| Sbjct 180 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGGTGAGTA 122 >seq1037 Length=20842 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 17069 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 17128 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 17129 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 17188 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 17189 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 17248 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | | | || || ||||| || || || ||||| ||||||||| Sbjct 17249 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 17297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997300279680