Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq122 102 1e-16 seq1010 93.3 5e-14 seq1556 84.2 3e-11 >seq122 Length=9388 Score = 102 bits (112), Expect = 1e-16 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 15352 GGAAGTCATGTATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACC 15411 ||| ||| | |||||||| | || ||||| || || || | | || | || || Sbjct 8174 GGATGTCTTTTATTCGGGAATCACGGGCGAGTTAATGCAGGGCTACGTTTTCTTCGGCCC 8233 Query 15412 GACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGG 15471 | ||||| || || ||||| |||||||| | |||||||||||||| || ||| ||| Sbjct 8234 CATCTACTACCAGCGCCTCAAGCACATGGTCACAGACAAGATGCACGCCCGCTCGACCGG 8293 Query 15472 ACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCG 15531 | | ||| ||| ||||||||| | | ||||| || | | || || ||||| Sbjct 8294 GCCACGGTCGATGCTGACTCGCCAGCCAACCGAGGGTCGGTCTCGCAGTGGAGGACTCCG 8353 Query 15532 CTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGA 15591 | |||| |||||||| |||||||| ||| ||||||| || | |||||||||| Sbjct 8354 CGTTGGTGAGATGGAGCGCGACTGCATGGTGGGCTACGGCGCGTCCAACCTCCTCAACGA 8413 Query 15592 GCGCATGTTTCTCA 15605 ||| || || ||| Sbjct 8414 GCGACTGCTTATCA 8427 >seq1010 Length=18280 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||||||| || || |||||||| || | || ||||| || ||||| Sbjct 11184 GGTGAAGATGTAGCGGCCCGCCGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 11243 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 || ||| | || | | || |||||| ||||||||||||||||| | ||| Sbjct 11244 GCCATCCTTGCGGAGCAGCGGAACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGAC 11303 Query 126300 AATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCC 126359 || |||| | || |||||||||||| | |||| ||| ||||| | |||||||| Sbjct 11304 GATCGTCTGGACAAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGTAGCC 11363 Query 126360 GCTCAGCTGCGCAACCTTGAT 126380 | |||||| | |||||||| Sbjct 11364 GGCAAGCTGCACGACCTTGAT 11384 >seq1556 Length=11391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 15056 ATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCC 15114 || ||||||||||| ||| | | | || ||||||||||| |||||| || | Sbjct 6646 ATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCATCCAGTTTCG 6704 Query 15115 CCAGGAAGACATGCCCTT-TACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCA 15173 |||||| ||||||||||| |||||| | ||||| ||| ||| | |||||||||||| Sbjct 6705 CCAGGAGGACATGCCCTTCAACCGCGAC-GGCATCGTGCCGGACCTCATCATCAACCCCC 6763 Query 15174 ACTGCATCCCGTCCCGCATGAC 15195 || ||| || ||||||||||| Sbjct 6764 ACGCCATTCCCTCCCGCATGAC 6785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611371923415200