Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq157 131 3e-25 seq1010 96.9 7e-15 >seq157 Length=1104 Score = 131 bits (144), Expect = 3e-25 Identities = 555/857 (65%), Gaps = 30/857 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 140 TCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 199 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||| || | ||| | | ||||| || || ||||| | Sbjct 200 GAGTTGTAGTGCTTCTCCTCGCCGAGCGATACAAGCAGCCGGTCCGCGACGAACTCGATG 259 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||| || || | |||||||||||||| || || | || ||||||||| Sbjct 260 TACTGCGCCATGAGCTCTGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCACAGATG 319 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | ||| Sbjct 320 AACTCTCGCTCGATGTTCACCGCATCCACAATGATCTCCAGCACGCGCTCGCGCGGCAGT 379 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || || || | || ||| |||||||||| Sbjct 380 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTCCGT--GTGTAGACCCTCGT 437 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | ||| || ||||||| || || ||| | || Sbjct 438 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCCGGCATCAGACCGCGCTTCTTCAG 495 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAA 251974 |||||| | ||||| || || || || || | | || || || | || | | | | | Sbjct 496 CCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCTTCCAC-CGCAGCGAAGCCTA 554 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGAC--AAGAACTTCTGTGCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | || | ||||| | ||||| Sbjct 555 TCAGCCGCTCCTGAAA--GCTCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTT 612 Query 252033 -CTTTCCAACCGCGGG---GATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 || | | | |||| | ||| ||| |||| || || ||| |||| Sbjct 613 CCTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAG-CTTCTCCTCG---C 668 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||| |||| || || ||||| | ||||||| ||||||| |||||| || | | Sbjct 669 TGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCA 728 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 || |||| | | ||||| ||||| || | | || || | ||| | Sbjct 729 TCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACATCGCTCATGAAGCGCT 788 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 |||| ||||| | || ||||| |||||||| || |||||| |||| | | ||||| Sbjct 789 GCGCAAGATTCTCGACGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGA 848 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| ||||||| ||| | | | |||||| ||||| | ||| Sbjct 849 TGAAGTGCCGCTCCCCGTCGTTCAGC--GCCGC-CCAGTCCTTCATGTCGTTGCCCAGGT 905 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCA 252387 | || ||||||||||||| | | || || ||||||| ||||| | | ||| Sbjct 906 CGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCA 964 Query 252388 GGGTACTTGATTGGGAA 252404 |||||| ||||||||| Sbjct 965 TGGTACTGGATTGGGAA 981 >seq1010 Length=18280 Score = 96.9 bits (106), Expect = 7e-15 Identities = 214/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 11519 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 11464 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| |||| || ||||| |||||||| || || ||||| Sbjct 11463 CCCGAGCGTGATTGACGGCTTCAAACCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 11404 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||||| ||| || | || || || || || || Sbjct 11403 GCGCAACTTGGTGAACTCCATCAAGGTCGTGCAGCTTGCCGGCTACGTCTCGGAGCACTC 11344 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| ||||| | | | ||| | || || || ||||| ||||| Sbjct 11343 CGCCTACCACCACGGCGAGCAGTCGCTTGTCCAG---ACGATCGTCGGAATGGCGCAGGA 11287 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | |||||||| || | || ||||| ||| | || Sbjct 11286 CTTTGTGGGCAGCAACAACGT---TCCGCTGCTCCGCAAGGATGGCCAGTTCGGTACGCG 11230 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 11229 TCTGCACGGTGGCAAGGA 11212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027802204619307