Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1037 152 9e-32 seq157 150 3e-31 seq1681 143 5e-29 seq1010 100 5e-16 seq2063 87.8 3e-12 >seq1037 Length=20842 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || || Sbjct 17070 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAC 17129 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 17130 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 17189 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | || || Sbjct 17190 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTCGGCTCCAC 17248 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||| || || || || || ||||| ||||| |||||||| Sbjct 17249 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 17296 >seq157 Length=1104 Score = 150 bits (166), Expect = 3e-31 Identities = 302/443 (68%), Gaps = 11/443 (2%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| ||| |||||||| | |||||||| Sbjct 102 TCATCACGCCGGCCTTCTGGTACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCT 161 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || | | | | | ||||| | | Sbjct 162 GCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGTTGTAGTGCTTCTCCTCGC 221 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | | | | ||||| || ||||||||||||||||| ||| || || | || Sbjct 222 CGAGCGATACAAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATGAGCTCTGCGT 281 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| || | ||||| || ||||| || ||| || ||| Sbjct 282 TCATGCCAATCA-GCCGCACCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCACC 340 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| || ||| ||| | |||| || | | ||| |||| || || | ||| Sbjct 341 GCATCC---ACAATGATCTCCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAG 397 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | | || | | ||| || ||||||||||| ||||| ||||||| Sbjct 398 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 457 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | |||||||||||| Sbjct 458 CTGAACGTCAGCCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 517 Query 10347 CCGGAGAACAGAAGACCCTCCAC 10369 ||||| || | || || ||||| Sbjct 518 CCGGAAAAGAAAATGCCTTCCAC 540 >seq1681 Length=36401 Score = 143 bits (158), Expect = 5e-29 Identities = 309/457 (68%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| || | || || ||||| |||||||| || | || || || || | Sbjct 1456 CACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATTTCCGTGCATAGGTTCGAGCAC 1515 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| |||||| ||| ||| | ||| ||| || || |||||||| ||| | Sbjct 1516 TTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCATGC-GTCCTTGTAGAGGAT 1574 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | ||| |||||||||||||||| || || ||| ||| || || | || | Sbjct 1575 GAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAACCACACCTCCTGGGCCTG 1634 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || ||| | | || ||||||||||||||||| || || ||| |||||| Sbjct 1635 GATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCT 1693 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACAT 31998 ||| || |||| | ||||| || ||| || || || | |||| ||| | | Sbjct 1694 CACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGATCCATCAGCGTCCACTTTCCCT 1753 Query 31999 CGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGG 32058 || | || ||| |||| ||||| || | ||||| |||||| || || | | || Sbjct 1754 CGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGG 1813 Query 32059 CGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGT 32118 |||| ||| |||| ||| ||| ||| |||||||| ||| | | |||||||| | Sbjct 1814 CGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGTCGGCAT 1873 Query 32119 GGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||||||||| || |||||||||| |||||||| Sbjct 1874 GCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCG 1910 >seq1010 Length=18280 Score = 100 bits (110), Expect = 5e-16 Identities = 307/471 (65%), Gaps = 14/471 (3%) Strand=Plus/Plus Query 176025 ATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTA 176084 |||||||||| | ||| | ||| ||| |||||||| ||| ||| | ||||| Sbjct 10969 ATGAGGCGCTCGAGGTTGCTGATGATCTCCAGCGGGTTGTAGTTCGGGATGCTCGTGCTG 11028 Query 176085 AATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAG 176144 || || || || || || | || || |||||||| | | |||||| |||| ||| Sbjct 11029 AACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATTGGGATGACCGGAATGTAG 11088 Query 176145 TATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCC 176204 | || || | | | ||||| || || ||| | | || | ||||||||| Sbjct 11089 AAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAGTCGTCGGCC 11148 Query 176205 TTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCA 176264 ||| || || |||||| | | || | |||||||| || | | | ||| Sbjct 11149 GGGTGAAAGATGGCCCGGGCGACCTGCATGAGCCGGGTGAAGATGTAGCGGCCCGCCGCG 11208 Query 176265 CTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTG----TCCGCGAGGAAGAAGCAAATT 176320 ||||||||| ||||| || || | |||||| || ||| | ||| | ||| | Sbjct 11209 TGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGGCCATCCTTGCGGA-GCAGCGGAAC 11267 Query 176321 GATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGA---GA 176377 | |||| | ||||| |||| || ||||||||||| || | ||||| | || Sbjct 11268 GTTGTTGCTG---CCCACAAAGTCCTGCGCCATTCCGACGATCGT---CTGGACAAGCGA 11321 Query 176378 CGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTT 176437 | |||||||||||| ||| ||| || ||| ||| ||||||| |||| |||| || Sbjct 11322 CTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGTAGCCGGCAAGCTGCACGACCTT 11381 Query 176438 GATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTG 176488 ||| | || | ||||||||| || |||||||| ||||| ||||| Sbjct 11382 GATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTG 11432 >seq2063 Length=30276 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 7053 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 7110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592136224440