Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1681 329 6e-85 seq157 279 1e-69 >seq1681 Length=36401 Score = 329 bits (364), Expect = 6e-85 Identities = 959/1451 (66%), Gaps = 53/1451 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| |||| | ||||| || | | ||||| |||||||| || || | |||| Sbjct 784 GAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCATAGACC-ACGCGCGAT 842 Query 244070 -AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 || || ||| |||| | ||||||| || | ||||| || |||||| ||||| Sbjct 843 GAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGAC 902 Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||| | ||| ||||||| || ||| ||||||| || ||||||| || Sbjct 903 GTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAGA 962 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGA 244247 ||| || |||||||| | |||||||| ||| | || ||| | ||| || | Sbjct 963 CGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCC---CACCTGCATCACCTT 1019 Query 244248 GTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCACA 244304 || |||| | ||||||||| || | || || || ||| ||||| Sbjct 1020 CTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTGGGCCGCGGGTTCTT----CCACA 1075 Query 244305 TGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT 244364 |||| |||||||| | |||| |||| | |||||||||| | ||||| ||| || || | Sbjct 1076 TGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCT 1135 Query 244365 CGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC 244423 | || ||||| || || | | || | || || |||| || || ||||||||| Sbjct 1136 CCTCCTTCGCCAG-TTCCATCGACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATC 1194 Query 244424 ATCTT-GTTCATGTCGCGG-GCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAG 244480 ||| ||||| ||| | |||| |||| || || || | | ||| | |||||| Sbjct 1195 -TCTGCGTTCACC-CGCTGCGCCTCCGCCG-AGACAAACGGCAGCCGCATGAGAATGAAG 1251 Query 244481 ACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTT---GGAGCGC 244537 |||| || || ||||||||||||| ||||||||| | || ||| |||| | |||| Sbjct 1252 GCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGC 1311 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 | ||| || ||||| |||||| |||||| || ||| |||||||| ||||| Sbjct 1312 GCCGTCTCG---ACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGCGCGTGATT 1368 Query 244598 ATGCG--GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 ||| | | ||| | || ||||| || | ||||| || || ||| | Sbjct 1369 -TGCTTTGTC-ACGGTGTAGAGAAGCTGGTGGTTGAACTCGCGCTTCTCAACGTCGACG- 1425 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 || | || || |||| | ||| |||||||| || ||| ||||| || Sbjct 1426 ----------AAGCGCGGC-AGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCG 1474 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 ||||||| |||||| || ||||| ||||| ||||||||| ||||| || | || Sbjct 1475 GCGACGTGTACTCGACAATTTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCT 1534 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 || || |||||| |||||| |||||||||||||| ||||| |||||||| ||||||| Sbjct 1535 TCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGA 1594 Query 244836 GCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGC 244895 ||| | |||||| | ||| | ||| |||| || |||| || | || Sbjct 1595 TCTGCGACTCGAGGATGGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGC 1654 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 |||| | ||||||||| ||| || ||| ||||| || || ||| || | Sbjct 1655 CCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGAC 1714 Query 244956 CGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGA 245015 | ||||||| ||| ||| || |||||| || || || || | | ||| | Sbjct 1715 CCGGGCACGTGTTCGGATCCATCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAA 1774 Query 245016 AGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAG 245075 | || || |||||||| || || | ||||||||| | || | ||| || ||| || | Sbjct 1775 ACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCCTTTCCCG 1834 Query 245076 TGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAG 245135 |||| ||||| || |||| |||||| |||| | ||||||||||| | ||||| | Sbjct 1835 TGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGG 1894 Query 245136 CGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTG 245191 ||| ||||| ||||| ||| |||||||||| | | || ||| |||| Sbjct 1895 CGAAAGCGCCCTTGCGCTTACCGCCGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTG 1950 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 |||| ||| || | ||||| | ||||| || |||||||||||| |||||| | Sbjct 1951 AAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCTATGTAGCTG 2010 Query 245252 CCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC-TTGGAGATGAG 245310 || | | || ||| | | || || | |||||||| ||| ||| ||| | Sbjct 2011 CCAGCAGCGCGGATATTGTGCACGTGCAGACCAATGCCGCCGGC-TGCTTTGCTGATCAC 2069 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 ||| || ||||| ||||| ||||| || ||||||||| |||| | ||| Sbjct 2070 GGCACACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCAG 2129 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 ||||| ||| || || ||||| ||| ||| | ||| || || || ||| ||||||| Sbjct 2130 GAAGCACGAGCTCATTTGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTG 2189 Query 245431 GGTAAAGTAGC 245441 ||| ||| ||| Sbjct 2190 GGTGAAGAAGC 2200 >seq157 Length=1104 Score = 279 bits (308), Expect = 1e-69 Identities = 590/867 (68%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 975 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 916 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | | ||| || || | Sbjct 915 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCGGCGCTGAACGACGGGGAGCGG 856 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || ||||||||||||| | |||||||||||| ||||| Sbjct 855 CACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCGTCGAGAAT 796 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 795 CTTGCGCAGC-GCTTCATGAGCGATGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 737 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 736 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 677 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| ||||| | | || || ||||||| || |||||| | Sbjct 676 CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCA 617 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 || ||||||||| ||||| | ||||||| ||| || || | | ||| | ||| | Sbjct 616 GAGGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-GAGCG 560 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| ||| ||| | || || || ||||| ||||| || || | ||| | | | || Sbjct 559 GCTGATAGGCTTCGCTGCGGTGGAAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTT 500 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 499 CTGGCTGAAGAAGCGCGGTCT-GATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGC 441 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGC 42879 | |||||||| || || | |||||| || ||||| |||| |||| ||| ||| || Sbjct 440 GCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATCAAGC 384 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||| | || ||||| || | || ||||| ||| || ||| | |||||| | Sbjct 383 ACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGAG 324 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||| ||| ||| | ||||||||| || |||||| Sbjct 323 AGTTCATCTGTGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCAGAGCTCATGGCGC 264 Query 43000 AGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| |||||| |||| || | ||| | || || | | |||| Sbjct 263 AGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTATCGCTCGGCGAGGAGAAG-CACTAC 205 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| || || || |||||||| ||||||| |||||| || |||||||||| ||||| Sbjct 204 AACTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 145 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||| || | || |||||| Sbjct 144 TTTGAGAAGAAGGTGGGTGAGTACCAG 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308190261520