Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1037 107 2e-18 seq1681 89.7 5e-13 >seq1037 Length=20842 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | Sbjct 17070 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAC 17129 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 17130 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 17189 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | |||| ||||| Sbjct 17190 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGC-TCCAC 17248 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 17249 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 17296 >seq1681 Length=36401 Score = 89.7 bits (98), Expect = 5e-13 Identities = 242/370 (65%), Gaps = 3/370 (1%) Strand=Plus/Plus Query 154912 TCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAG 154971 ||||||||| ||| || | ||||| ||||| || | || || || | ||| || Sbjct 1769 TCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCCT 1828 Query 154972 CGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAAT 155031 ||| |||| || || | || ||| || | |||||||| ||||| ||||| | || Sbjct 1829 TTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGAT 1888 Query 155032 ATACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGATCCACGTGACGCACACAATTAT 155088 | ||||| | ||||| ||||| || || || || ||||||| || | || | Sbjct 1889 AGACGGCGAAAGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGT 1948 Query 155089 TGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGC 155148 || | ||||| | || ||| | | ||| | | |||||||||||||||| ||| || Sbjct 1949 TGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCTATGTAGC 2008 Query 155149 TGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTT 155208 |||| ||| || || || || | | || | || ||| | ||| || Sbjct 2009 TGCCAGCAGCGCGGATATTGTGCACGTGCAGACCAATGCCGCCGGCTGCTTTGCTGATCA 2068 Query 155209 GCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACA 155268 ||||| ||| | || ||||| || || | ||||||||| || ||| ||| || || Sbjct 2069 CGGCACACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCA 2128 Query 155269 AGAAACACGA 155278 ||| ||||| Sbjct 2129 GGAAGCACGA 2138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628392913880