Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1681 228 8e-55 >seq1681 Length=36401 Score = 228 bits (252), Expect = 8e-55 Identities = 508/754 (67%), Gaps = 14/754 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| || ||||| || ||||| ||| || ||| ||||| |||||| Sbjct 2186 GCCACCCCGACCCTCTTTAACGCCGGCACCCCAAAGCCGCAAATGAGCTCGTGCTTCCTG 2127 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| ||| |||| ||| || | ||||| |||||||| ||||| Sbjct 2126 GTGGCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTG 2067 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| ||| || || || || || | || ||| | | || || || | Sbjct 2066 ATCAGCAAAGCAGCCGGCGGCATTGGTCTGCACGTGCACAATATCCGCGCTGCTGGCAGC 2007 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || ||||| ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 2006 TACATAGCTGGCACCAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAAC 1947 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||||||||| || || | | | ||||| ||||||| |||||| Sbjct 1946 AACACCGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTAT 1887 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGC-GAAA-GAACCAC-GG 94247 |||||||||||||| || ||| | ||||||| |||| |||| | | ||| || Sbjct 1886 CTCGAGCCCTGGCATGCCGACATCTTTGGCTTTC----TGCTGCTGAAACGCAACACGGG 1831 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| || | ||| | |||||||||||||| || ||| | ||||| || ||||| Sbjct 1830 AAAGGATGACCAGCGCGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTAT 1771 Query 94308 GAAACGCGTCGAGAAAAACTCCG---CCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 | | |||| | ||||| | | |||| || | ||| || || || || Sbjct 1770 G--AGGCGT-GTGAAAAGCGAGGGAAAGTGGACGCTGATGGATCCGAACACGTGCCCGGG 1714 Query 94365 ACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG 94424 || ||| | ||| | ||||| | || | || ||||| || |||| Sbjct 1713 TCTCAGCGATTGCTATGGTGAGGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGG 1654 Query 94425 CAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484 | | | ||| || | || | || ||||| | ||| | || ||| | Sbjct 1653 CCGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGAT 1594 Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544 |||||||| ||| | |||| | | ||||||| | |||| |||||| |||||| | Sbjct 1593 CGAGACGGGGGGGCCGTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAA 1534 Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCC 94604 | | ||||| ||||||| ||||||| || ||||| || ||||||||||| || || || Sbjct 1533 GAATCTCGGCACGATCAAGTGCTCGAACCTATGCACGGAAATTGTCGAGTACACGTCGCC 1474 Query 94605 GGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 | | |||| || ||||| ||||| | ||||||| Sbjct 1473 GCAGGAGACGGCGGTGTGCAACCTCGCCTCCATC 1440 Score = 111 bits (122), Expect = 2e-19 Identities = 198/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || ||||||||||| || || || || ||||||| || ||||||||| Sbjct 995 AACTCACTGCTGGTTGCCCCCATGCCAACCGCGTCTACCTCGCAGATTCTCGGCAACAAC 936 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||| ||| | ||| | | || ||||| ||| || ||| Sbjct 935 GAGTGCTTCGAGCCCTTCACCTCAAACATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTC 876 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268 || || | |||||| ||||| | |||||| | | | ||| | ||| || | Sbjct 875 CCTGTTGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGTCTATGGAACGAGTCG 816 Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAATACCGG 95326 | |||| | | | | ||||||||| ||| | || | || || |||| Sbjct 815 ATGCGGAACGAGATCATCTCCTACAACGGCTCTATCCTCACTATTAACGGC--ATCCCGG 758 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | ||| | | | ||| ||| ||||||||||||||| ||||||||| Sbjct 757 ACGACCTGAGAGAGCTTTACCGGACCGTGTGGGAGATTCCGCAGCGC 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494706954526920