Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1681 322 5e-83 seq157 145 8e-30 seq1037 100 3e-16 >seq1681 Length=36401 Score = 322 bits (356), Expect = 5e-83 Identities = 609/876 (70%), Gaps = 25/876 (3%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATCTC 153655 || || || || || || || || |||||||| | ||||| || |||||| || || || Sbjct 1438 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATTTC 1496 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||| ||| || || ||| | ||| | ||| || |||| ||||| Sbjct 1497 CGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTTGCA 1556 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 ||||| ||| |||| ||| |||| || || ||||||| |||| |||| ||| ||| Sbjct 1557 TGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGCAAA 1616 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 || || ||||| || | | | || | || |||||||||| |||||| |||| Sbjct 1617 CCA---CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCT 1672 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 |||| || ||||||||||| || || ||||| ||| ||| || || ||| | |||| Sbjct 1673 CGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGAT 1732 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 |||||||| |||| | | ||| || || || | ||| |||||||| || | ||| | Sbjct 1733 CCATCAGCGTCCACTTTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACA 1792 Query 153952 GCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009 ||||||| | |||||||| |||| || || ||| ||| ||||||||||||| Sbjct 1793 GCGCGTAGAAGAGGTCGCGGGCGCGCTG--GTCATCCTTTCCCGTGTTGCGTTTCAGCAG 1850 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | || | |||||||||| |||||||| || | |||||||| | || || || || Sbjct 1851 CAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTTGCG 1910 Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| |||||||| || |||| ||| | | |||||||||||||| | ||| || | Sbjct 1911 CTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCAC 1970 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 || ||| | | ||||||||||| | || | |||||| ||||| | | || Sbjct 1971 GAGCCCGTTCGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATATTGTG 2030 Query 154187 CACGTTAACGCCAATGCCGCCGCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAGCGTCC 154245 ||||| | |||||||||||| | | ||||| | || | || || || ||||| Sbjct 2031 CACGTGCAGACCAATGCCGCCGGC-TGCTTTGCTGATCACGGCACACTCCTTGAGCGTGT 2089 Query 154246 TGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 |||||||||||||||||| || | | |||||| | || ||| ||||| | ||||||| Sbjct 2090 CGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTGC 2148 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCT 154363 || | | || || || ||||||||| || | ||||| || || || || | Sbjct 2149 GGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTTG-A 2207 Query 154364 CATCATGCGGTACGTTTCGATGGC-GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 ||| | | ||||| || | ||||| | ||| |||||||||||| || |||| Sbjct 2208 CATGAGGTCATACGTCTCACGCACATTCTTC-AGATCTGTGCCGTGAATGCCAAGAGCGA 2266 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTC 154458 | ||||||| ||| ||||| ||||| || ||| || Sbjct 2267 CACGCATGAACATCTGCTGTGGACGCTCCACGATTC 2302 >seq157 Length=1104 Score = 145 bits (160), Expect = 8e-30 Identities = 364/539 (68%), Gaps = 13/539 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| | || ||| | |||||| | | | ||||| ||||||| || Sbjct 652 GCTGCTGCACGCGATACAG-ACGATCCCGTGCATCCAGAGGAAGGCGGAGTGGGCCGTGC 594 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| |||| | ||| | ||| | | |||| || | | |||||| || Sbjct 593 GGTGGATCGGGAGC---AGCGCGA-GCTTTCAGGAGCGGCTGATAGGCTTCGCTGCGGTG 538 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 || ||| | || |||||||| || ||| | || | | || | | || | Sbjct 537 GAAGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 478 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 477 ATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 418 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || || ||||| ||||| ||| | | | | ||| || || | || | Sbjct 417 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTG 358 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || | ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 357 GAG-ATCATTGTGGATGCGGTGAACATCGAGCGAGAGTTCATCTGTGACGCGCTGCCGGT 299 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGATC 52719 |||| | ||||||||||| || |||| ||| ||||||||||||| || ||||| | Sbjct 298 GCGGCTGATTGGCATGAACGCAGAGCTCATG-GCGCAGTACATCGAGTTCGTCGCGGACC 240 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTT 52778 | ||| | || |||||| || ||| ||| |||| | ||| | ||||| || || Sbjct 239 GGCTGCTTGTATCGCTCGGCGAGGAGAAGCACTACAACTCGACGC-AGCCGTTCGACTTC 181 Query 52779 ATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| || |||||| || || ||||| Sbjct 180 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGGTGAGTA 122 >seq1037 Length=20842 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 17069 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 17128 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 17129 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 17188 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 17189 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 17248 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | ||| || || ||||| || || || || |||||||||| Sbjct 17249 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 17298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246103983440