Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1681 125 7e-24 seq1037 107 2e-18 >seq1681 Length=36401 Score = 125 bits (138), Expect = 7e-24 Identities = 564/870 (65%), Gaps = 39/870 (4%) Strand=Plus/Plus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTC 146693 ||||| ||||| | ||| || || || ||||| | | | || |||| ||||| || Sbjct 1438 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTG-TACTCGACAATTTC 1496 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTGTTG 146751 | ||| ||||| ||||||||| |||| | ||| || ||||| ||| ||||| Sbjct 1497 CGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGC--TGTTG 1554 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAAT 146811 || | |||||||||||| ||| |||| ||||| || |||| | | ||||| |||| Sbjct 1555 CATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGG-- 1612 Query 146812 CTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATTTCT 146869 | || || | ||| ||| | | | ||||| || | | ||||| || Sbjct 1613 CAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCT 1672 Query 146870 CGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGAC 146929 |||| | ||||| ||| || ||| ||| || || || | || ||| Sbjct 1673 CGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTCGGAT 1732 Query 146930 AGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATCCAA 146988 | ||||| ||| | || || | || ||| || |||||||| ||| || ||||| Sbjct 1733 CCATCAGCGTCCACT-TTCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 1791 Query 146989 AG-GCCCAGCATCAAGTCGCGAGC---CTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAA 147044 || || || | | |||||| || || | | |||| ||| |||||||| ||| Sbjct 1792 AGCGCGTAGAAG-AGGTCGCGGGCGCGCTGGTCATCCTTT---CCCGTGTTGCGTTTCA- 1846 Query 147045 GTTGAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTT 147103 | | || | | || || || | |||||| ||||| | || |||||| ||||| | Sbjct 1847 GCAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCT 1906 Query 147104 TTCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 | ||||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | Sbjct 1907 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 1966 Query 147161 ACACGAGGCCGCCGGATTTTG---TGGTGCCGT---TGTAT-TG-----AGCGCTGACGC 147208 |||||| ||| || | ||||||| |||| || ||||| || Sbjct 1967 GCACGAGCCCGTTCGACGTGCCGTTGGTGCCAGCTATGTAGCTGCCAGCAGCGCGGATAT 2026 Query 147209 TTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGG 147268 | |||||| ||| || | || ||| | || |||| || |||| | | | Sbjct 2027 TGTGCACGTGCAGACCAATGCCGCCGGCTGCTTTGCTGATCACGGCACACTCCTTGAGCG 2086 Query 147269 TCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAACACATT 147327 | | ||||||||||||||||||||| ||||| || || |||||| ||||| | |||| Sbjct 2087 TGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGC-CACCAGGAAGCACGAGCTCATT 2145 Query 147328 TGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGA 147387 || || ||||| || ||| || || ||| ||||||| ||||| |||| Sbjct 2146 TGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTT 2205 Query 147388 CTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCG 147447 ||| | | |||||| ||| | || | | || |||||||||| | || ||| Sbjct 2206 GACATGAGGTCATACGTCTCACGCACATTCTTCAGATCTGTGCCGTGAATGCCAAGAGCG 2265 Query 147448 ACGCGCATGAGCATGTGCTGGGGTCGTTCC 147477 || ||||||| ||| ||||| || || ||| Sbjct 2266 ACACGCATGAACATCTGCTGTGGACGCTCC 2295 >seq1037 Length=20842 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 17070 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAC 17129 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 17130 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 17189 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 17190 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 17249 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 17250 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 17298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485185742480