Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1681 105 6e-18 seq157 82.4 7e-11 >seq1681 Length=36401 Score = 105 bits (116), Expect = 6e-18 Identities = 409/638 (64%), Gaps = 11/638 (2%) Strand=Plus/Minus Query 123087 GAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTT 123146 || ||||||||| ||| ||||| || || | || || || |||| |||| Sbjct 2114 GAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCA 2055 Query 123147 GGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGC-GGAAGCCGCATCAGAAG 123205 | ||||||||| || || |||||||| | | | | | || || ||| ||| | Sbjct 2054 GCCGGCGGCATTGGTCTGCACGTGCACAATATCCGCG-CTGCTGGCAGCTACATAGCTGG 1996 Query 123206 CACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCG 123265 |||| |||| | | |||||||| | ||||| || || | ||| ||| ||| || Sbjct 1995 CACCAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCG 1936 Query 123266 GCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTG 123322 |||| |||||||||||| || ||||| ||||| | || ||||||| || || || Sbjct 1935 CTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTG 1876 Query 123323 GCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAA 123382 ||| | || | | | ||| | | |||||||||| ||| ||| || || Sbjct 1875 GCATGCCGACATCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGCG 1816 Query 123383 AGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGA 123442 |||||||| | || ||||| | ||| | || ||| |||||||| | || || ||| Sbjct 1815 CGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAG 1756 Query 123443 CGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGG 123502 ||| || |||| |||| ||| ||| | ||| || || | ||||| || || Sbjct 1755 CGAGGGAAAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGG 1696 Query 123503 CAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGT 123562 | ||||||| | | |||| || |||||| ||| ||| || | | | Sbjct 1695 TGAGGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGAT 1636 Query 123563 TCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCC 123619 | ||| | || ||| ||| || |||| | || |||| || || ||| Sbjct 1635 CCAGGCCCAGGAGGTGT---GGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCC 1579 Query 123620 GTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAAT 123679 || ||| |||||||| ||||| |||||||| || | || |||| || | || || || Sbjct 1578 GTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGAT 1519 Query 123680 AAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || || || || ||| | |||||| |||| |||| Sbjct 1518 CAAGTGCTCGAACCTATGCACGGAAATTGTCGAGTACA 1481 >seq157 Length=1104 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 138369 TTGTAATACAAGCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTG 138428 ||||| || ||| || |||| ||||||| ||| |||||||| ||||| || |||||| Sbjct 398 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 457 Query 138429 CTAAACGTCAGCCCCGGCAT 138448 || ||||||||||||||||| Sbjct 458 CTGAACGTCAGCCCCGGCAT 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988357344920