Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1681 210 3e-49 seq157 93.3 5e-14 >seq1681 Length=36401 Score = 210 bits (232), Expect = 3e-49 Identities = 884/1374 (64%), Gaps = 49/1374 (4%) Strand=Plus/Plus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| ||| ||||||| ||| || |||||| ||||| || || || | | Sbjct 842 TGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGA 901 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 |||||||| | ||| | ||||| |||||||| ||||| || | || || | || | Sbjct 902 CGTAGATGTTTGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTAG 961 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 | || || |||||||| || | || || |||||| || |||||| | | | | Sbjct 962 ACGCGGTTGGCATGGGGGCAACCAGCAGTGAGTTGCGCAGGCCCACCTGCATCACCTTCT 1021 Query 116021 CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCC-------CTCCCACATATCA 116073 |||||||| | ||||||| || || | ||| || || |||||| || Sbjct 1022 CCTTGAGGCTGGCCCAGTCCCAGC-GACCGCTGTTGGGCCGCGGGTTCTTCCACATGTCG 1080 Query 116074 AACTGGAGGATACCTTGGGACGCTGGC---GAT-CCCTCAAATGTCTCATATGGGCCCTC 116129 ||||| || || || | ||||||| | | |||| || ||||| || |||||||| Sbjct 1081 AACTGCAGAATGCCCT----CGCTGGCCGGGCTGCCCTTGAAGGTCTCGTACGGGCCCTC 1136 Query 116130 AACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCG 116189 ||| ||||| ||| || ||| | || || || || || || || || Sbjct 1137 CTCCTTCGCCAGTTCCATCGACGACTCAACCGCAGCAAAGTAAATCGTTTCGAAGATCTC 1196 Query 116190 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATC 116249 || |||| || ||||| | || |||||| || || | ||| || | || Sbjct 1197 TGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGAATGAAGGCGTC 1256 Query 116250 CGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGT 116309 |||||| || || || |||||||| || || || | | ||| ||| | || || || Sbjct 1257 CGCGAGCCCCTGCACGCCGAGGCCGATGGGACGGTTGCGCATGTTACTGTGGCGCGCCGT 1316 Query 116310 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| || || || | || | |||||||| | ||||| || |||| |||||| Sbjct 1317 CTCGACCGGGTAGTAGTTGCGGTCGATAACGCGGTTTAGGTTGCGCGTGATTTGCTTTGT 1376 Query 116370 GA---TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 116426 | | | |||||| | || | || | ||| |||| | | ||| | || Sbjct 1377 CACGGTGTAGAGAAGCTGGTGGT--TGAACTC-GCGCTTCTCAACGTCGACGAAGCGCGG 1433 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 || ||||| || || || || ||||| | ||||| | | |||||||| | ||| Sbjct 1434 CAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAAT 1493 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 |||||| || | || || | ||| || ||||| | ||||| || || ||||| |||| Sbjct 1494 TTCCGTGCATAGGTTCGAGCACTTGATCGTGCCGAGATTCTTCTGGTTCGACTTGCTGTT 1553 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || || ||||||||||| || | ||| ||||||||| | || |||| ||| || || Sbjct 1554 GCATGCGTCCTTGTAGAGGATGAACGGCCCCCCCGTCTCGATCTGCGACTCGAGGATGGC 1613 Query 116607 CTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 116666 ||| || || ||| | | || | | | || ||||| |||||| Sbjct 1614 AAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTC 1673 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGC---CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||||| ||||||||| ||| ||| ||| | |||||| ||| || | | || || Sbjct 1674 GTAGAGCCGCTCAAACTCCTCA-CCATAGCAATCGCTGAGA-CCCGGGCACGTGTTC-GG 1730 Query 116724 ACAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | | || | ||| || || | || || || ||| |||| || || |||||||||| Sbjct 1731 ATCCATCAGCGTCCACTTTCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGGATCC 1789 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAA 116840 | ||||| ||||||| || || ||| ||| || || | ||| ||| | || Sbjct 1790 ACAGCGCGTAGAAGAGGTCGCG--GGCGCGCTGGTCATCCTTTCCCGTGTTGCGTTTCAG 1847 Query 116841 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 116900 | || |||| | | ||| || || ||||| || || || || || |||| | ||||| Sbjct 1848 CAGCAGAAAGCCAAAGATGTCGGCATGCCAGGGCTCGAGATAGACGGCGAAAGCGCCCTT 1907 Query 116901 GCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 ||| || || |||||| || || | || || ||| || ||||| |||||||| Sbjct 1908 GCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGG 1967 Query 116958 AATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGACA 117015 | || || | || ||| || || || || | || | || | || | Sbjct 1968 CACGAGCCCGTTCGACGTGCCGTTGGT--GCCAGCTATGTAGCTGCCAGCAGCGCGGATA 2025 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG-AGATTTGTGCGCACTCCGTGAG 117074 | ||| | ||||| |||||| || || | | ||||| ||| || |||||| |||| Sbjct 2026 TTGTGCACGTGCAGACCAATGCCGCC-GGCTGCTTTGCTGATCACGGCACACTCCTTGAG 2084 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGA 117131 || ||||||| || ||||| ||| |||| || | ||||||| |||| Sbjct 2085 CGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACCAGGAAGCACGAGCT--- 2141 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 |||||| ||| |||| || || ||||| |||||||| || || |||||| |||| Sbjct 2142 CATTTGCGGCTTTGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAA 2195 >seq157 Length=1104 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| || |||||||| || || ||| ||| || ||||| ||||| Sbjct 424 GTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGACC 483 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| | ||| || || || || || ||||| || || ||||| Sbjct 484 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCTTCCACCGC 543 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| | | || ||||| || ||| | | | | | |||| || || Sbjct 544 AGCGAAGCCTATCAGCCGCTCCTGAA---AGCTCGCGCTGCTCCCGATCCACCGCACGGC 600 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||||| ||| ||| || |||| ||||| ||||| Sbjct 601 CCACTCCGCCTTCCTCTGGATGCACGGGATCGTCTGTATCGC 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487053957320