Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq157 291 8e-74 seq1037 122 9e-23 >seq157 Length=1104 Score = 291 bits (322), Expect = 8e-74 Identities = 573/834 (69%), Gaps = 24/834 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||||| |||||||| || || || || |||| Sbjct 103 CATCACGCCGGCCTTCTGGTACTCACCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTG 162 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | |||||||||||| ||| Sbjct 163 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGTTGTAGTGCTTCTCCTCGCC 222 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || | | | || ||||||| ||| || |||||||||||||| |||| |||| || Sbjct 223 GAGC-GAT--ACAAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATGAGCTCTGC 279 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || | ||| |||||||||||||| || || || | |||||||| || Sbjct 280 GTTCATGCCAATCAGCCGCACCGGCAGCGCGTCACAGATGAACTCTCGCTCGATGTTCAC 339 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTT---GCACCAAATGC-- 132882 ||| || | ||| ||| |||||| | || |||| ||| || | ||| Sbjct 340 CGCATCCACAATGATCTCCAGCACGCGCTC---GCGCGGCAGTTTGTGCTTGATGTGCGA 396 Query 132883 -TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 ||| ||| || ||| || ||||| || | |||||||| | || ||||| ||||| Sbjct 397 GTTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTT 456 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| |||| || ||||| || ||||| || || ||||| || | ||| ||| Sbjct 457 GCTGAACGTCAGCCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGA 516 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || |||||||| | ||| || || || ||||| | | ||| ||||| | ||| | | Sbjct 517 CCCGGAAAAGAAAATGCCTTCCACCGCAGCGAAGCCTATCAGCCGCTC-CTGAAAG---C 572 Query 133062 TT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 | | |||| ||||||| |||| ||||| || ||||| | || |||||| |||| Sbjct 573 TCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCCTCTGGATGCACGGGATCG 632 Query 133121 TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATG 133179 | | || |||| || || || || ||||| || | | || | ||| ||||| | Sbjct 633 TCTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGC 691 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 || || ||| | |||||||| | ||||||||| | || || ||||| || Sbjct 692 AGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCG 751 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 |||||||| ||||| ||| || ||| |||| | ||||| ||| ||| ||| Sbjct 752 CGCGCCTCTGGCACCTTCACATCGCTCATGAAGCGCTGCGCAAGATTCTCGACGACTATG 811 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||| Sbjct 812 CCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTC 871 Query 133360 AAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 |||| | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 872 -AGCGCCGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCA 924 >seq1037 Length=20842 Score = 122 bits (134), Expect = 9e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | | Sbjct 17296 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 17237 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 17236 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 17179 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | ||||| || ||||||| Sbjct 17178 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGTCGGACTACA 17119 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 17118 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 17069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156375575680