Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1681 159 4e-34 >seq1681 Length=36401 Score = 159 bits (176), Expect = 4e-34 Identities = 680/1055 (64%), Gaps = 21/1055 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||||||||||| ||||| | || || || || |||| | | ||| Sbjct 2288 CCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCACAGATCTGAAGAATGTG 2229 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||| || ||| ||||| || | |||| |||||| || || |||||||| Sbjct 2228 CGTGAGACGTATGACCTCATGTCAAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 2169 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || |||| || |||||| | || ||||| | || |||||||| Sbjct 2168 AACGCCGGCACCCCAAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAGGAC 2109 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT-CAAAGTGGGCTGG 111850 ||| | ||||| |||| ||| |||| || |||||| ||| ||||| | | || Sbjct 2108 AGCATCGACGGCATCTACGACACGCTCAAGGAGTGTGCCGTGATCAGCAAAGCAGCC-GG 2050 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA-GGTACAA 111909 || || || ||||| | || || || | || | | | ||| || || | Sbjct 2049 CGGCATTGGTCTGCACGTGCACAATATCCGCGCTG-CTGGCAGCTACATAGCTGGCACCA 1991 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 1990 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 1931 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || || |||||||| || |||| |||||||| ||||| ||||| | Sbjct 1930 TGGACCAGGGCGGCGGTAAGCGCAAGGGCGCTTTCGCCGTCTATCTCGAGCCCTGGCATG 1871 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | || ||| | | || || | || | |||| || | || || ||| || Sbjct 1870 CCGACATCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAGGATGACCAGCGCGCCC 1811 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAGT 112145 |||| ||||||| ||| || ||||| |||||||| || |||| | | || | | ||| Sbjct 1810 GCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAG- 1752 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || || ||| | || | ||| ||| | || |||||| |||| | |||||| Sbjct 1751 GGAAAGTGGACGCTGATGGATCCGAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAG 1692 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGCC 112264 |||||||| |||||| |||||| || | || |||| | |||| | || Sbjct 1691 GAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-CC 1634 Query 112265 AGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 || ||| || |||||| || || ||| |||| || | |||||| || || | Sbjct 1633 AG--GCCCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACGGGGGGGCCGTT 1576 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 || || ||||| ||||| || ||| ||| || || |||||| | || |||||| Sbjct 1575 CATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTCGGCACGATCAA 1516 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTGT 112440 | | || ||||| || || ||||| | || | || | | | | |||||||| |||| Sbjct 1515 GTGCTCGAACCTATGCACGGAAATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTGT 1457 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGAT 112499 | |||||||| || ||||| || || | || || |||| | | | || | Sbjct 1456 GCAACCTCGCCTCCATCGCGCTGCCGCGCTTCGTCGACGTTGAGA-AGCGCGAGTTCAAC 1398 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | ||| || || || || |||| ||||||||| | ||||| || Sbjct 1397 CACCAGCTTCTCTACACCGTGACAAAGCAAATCACGCGCAACCTAAACCGCGTTATCGAC 1338 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||| || ||||| || || | ||| ||| | ||||||| || || Sbjct 1337 CGCAACTACTACCCGGTCGAGACGGCGCGCCACAGTAACATGCGCAACCGTCCCATCGGC 1278 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 ||||| || || || |||||||| | |||||||| Sbjct 1277 CTCGGCGTGCAGGGGCTCGCGGACGCCTTCATTCT 1243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722016371440