Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20amazonensis_20[genbank_20GCA_5F000438535.1_202013-07- 18] 2,627 sequences; 29,029,348 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2242 150 1e-31 seq1556 96.9 3e-15 >seq2242 Length=10277 Score = 150 bits (166), Expect = 1e-31 Identities = 407/613 (66%), Gaps = 26/613 (4%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| | ||| || | || | ||| |||||||||| ||||| || ||||| Sbjct 3544 CTCGAGCTGCGCCTTGAGGGCATCGATGTGGCTGCGGTAGACGTGGGCGTCGCCGAGGGT 3485 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| |||| ||| || || || || || | | || || | ||||| || | Sbjct 3484 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGAATGGTGAGCAGCGC 3425 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||||||| ||||| || ||||| |||||||| | ||| | ||||| ||| Sbjct 3424 GTAGGAGGCGATGTTGAAGGGGACGCCGAGGCCCATGTCGCACGAACGTTGGTACAGCAT 3365 Query 29967 ACACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAG 30019 || || ||||| ||||| | ||||||| || ||| | ||||||||| | Sbjct 3364 GCAGGATAGCTCGCTCTTCTCCGT-GTTCACGTAGAATTGAGCGAGCAAGTGGCACGGCG 3306 Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC---GCACACGATGATGCGCCTGT 30076 | || ||||| | || | |||||||| || | ||| || || || | || Sbjct 3305 GCAGTGCCATCTTGTGCAGCGCGCACGGGTTCCACGCAGTGAACAGGA-GA--CGGCGGT 3249 Query 30077 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 30136 | | ||||| | |||| |||||| | | | ||| ||||||||| || ||| Sbjct 3248 CGTTCGGGTTCGCCTTGATCGTCTCCACGATGAACTTGATCTGGTCCACCCCC-TCGCCG 3190 Query 30137 A-GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30195 ||||| || | || ||| ||||| ||||| || | ||||||||| ||||| Sbjct 3189 TCGTAGTTCGCTTCGAGCCCCCGGTATTCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAG 3130 Query 30196 ACCGGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 30251 || || || ||||| ||| | ||| |||| ||||| | |||| | ||| || Sbjct 3129 ACAGGGCCGAGGTCCATCTCCGTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTC 3074 Query 30252 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 30311 | || |||||| |||||||||| | || |||| || | |||| | | |||||| Sbjct 3073 GCGCGAGCCGTTGCCGTCCCAGATGTGTATGTCCTTGTCCGCGAGCAGCTGCGCGTTTGT 3014 Query 30312 GGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGG 30370 ||| | | ||||||||||| |||||| ||| ||| | ||| ||||| | ||| | Sbjct 3013 CTCCCCGCGCAGGAACCACAGCAACTCCTCGCAC-ACGCCTCGCCAGAAGACGCGCTTCG 2955 Query 30371 TCGTGAGGAGGGG 30383 |||| || || || Sbjct 2954 TCGTCAGCAGTGG 2942 >seq1556 Length=11391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/153 (76%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 52046 CCCAGAGATGGGCGACAAGTT-TGCGTCGTTCACGGCGCAAAAGGGGACGTGCGG-AGCC 52103 |||| | || ||||||||||| ||| | ||||| |||||||| || ||| | || Sbjct 6639 CCCAAACATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCATCC 6697 Query 52104 -GTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCAT 52162 || | ||||||||||||||||||| || ||||| | ||||| ||||||||||| Sbjct 6698 AGTTTCG--CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCAT 6755 Query 52163 CAACCCCCACGCCTTTCCATCCAGGATGACCGT 52195 ||||||||||||| |||| ||| | ||||| || Sbjct 6756 CAACCCCCACGCCATTCCCTCCCGCATGACGGT 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604517469071